Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq13338 141 2e-28 seq13339 122 2e-22 seq5107 118 3e-21 seq13337 114 3e-20 >seq13338 Length=675 Score = 141 bits (156), Expect = 2e-28 Identities = 158/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || |||| || || | ||||| || ||||| || || || |||||||| Sbjct 226 TCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGC 285 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || |||||||| |||||||| || || ||||| ||||| |||||| ||||| Sbjct 286 AAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGA---TCTGG 342 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | |||||||| ||||| ||||| || ||||| ||||| || || | || |||||| Sbjct 343 GGGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTC 402 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| || ||||||||||| ||||| || Sbjct 403 CACTTCCAGAGTGATCGTCTTACCGGTGAG 432 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288313 CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCT 288372 || || ||||| | ||| ||||| || ||||| | |||||||||| ||||||||| Sbjct 1 CGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCT 60 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 || || || ||||| || || || ||||| || |||| |||| ||| || ||||| | Sbjct 61 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAA 120 Query 288433 GTGATCGTCTTCCCGGTCAG 288452 ||||| ||||| || || || Sbjct 121 GTGATGGTCTTTCCTGTGAG 140 >seq13339 Length=377 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||||| || || ||||||| || ||||||||||| || ||||| || Sbjct 26 TCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGC 85 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 || ||||| ||||| || | ||| ||||| || || |||| ||| || || ||| Sbjct 86 AAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTG---GTCTGG 142 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| ||||| || || ||||| ||||| || ||||| || || | ||| || || Sbjct 143 GGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTC 202 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 ||||| | |||||||| || ||||||| Sbjct 203 GACTTCCAAGGTGATCGTTTTGCCGGTCA 231 >seq5107 Length=2524 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGT-GCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||| ||||| | || || | |||| || | ||||| | ||||||| || |||| Sbjct 724 CCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCT-GGATATTGTAATCGGA 782 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| | ||| || || ||||| || ||||| || ||| | ||| Sbjct 783 CAAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGG 842 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || ||||||||||| || ||||| || |||| || || ||||| || Sbjct 843 GATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAAC 902 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAG 288452 |||||| ||||||||||| || || || Sbjct 903 TTCGAGGGTGATCGTCTTGCCTGTAAG 929 Score = 118 bits (130), Expect = 3e-21 Identities = 153/210 (73%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || || | ||| | ||| || || ||||| || |||||||| Sbjct 1307 TCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGC 1366 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 ||| ||||| |||||||| | ||||||||| || ||||| ||||| ||||| ||| Sbjct 1367 GAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTG---GTCTGG 1423 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || || || ||||| || || || ||||| || |||| |||| ||| || Sbjct 1424 AGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTC 1483 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| | ||||| ||||| || || || Sbjct 1484 AACTTCCAAAGTGATGGTCTTTCCTGTGAG 1513 Score = 114 bits (126), Expect = 3e-20 Identities = 152/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || |||||| || || | ||||| || ||||| || || || |||||||| Sbjct 1599 TCCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGC 1658 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG- 288364 || || || ||||| || | |||||| || || ||||| | ||| |||||| |||| Sbjct 1659 AAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGA---TCTGT 1715 Query 288365 --GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 |||| ||||| || || ||||| || ||||| || || || || | || |||||| Sbjct 1716 GGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTC 1775 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| || ||||||||||| ||||| || Sbjct 1776 CACTTCCAGAGTGATCGTCTTACCGGTGAG 1805 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || | ||||| ||| || ||||| || || || | ||| Sbjct 1020 TCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGC 1079 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || || || | ||| ||||| || ||||| |||||||||||| ||| Sbjct 1080 CAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGG 1139 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || ||||| || || || ||||| || |||| || ||||| || Sbjct 1140 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGAC 1199 Query 288426 TTCGAGCGTGATCGTCTTCCCGGT 288449 || | ||||| || || || || Sbjct 1200 CTCCAAAGTGATGGTTTTGCCAGT 1223 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||||| || || ||||||| || ||||||||||| || ||||| || Sbjct 2180 TCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGC 2239 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || |||| ||||| || | ||| ||||| || || |||| ||| || || ||||| Sbjct 2240 AAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTG---GTCTGG 2296 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | || ||||| || || || || ||||| || ||||| || || | || || || Sbjct 2297 GGGAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTC 2356 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 ||||| | ||||||| || || |||| Sbjct 2357 GACTTCCAAGATGATCGTTTTGCCAGTCA 2385 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/173 (71%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || || || || || || || ||||| || | ||| || || || ||| Sbjct 1922 TCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAG 1981 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||||||||| ||| ||| || || || ||||| ||||| || || || || Sbjct 1982 ATAAGACGCTGTTG---ATCCGGGGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACA 2038 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || || | |||| || || ||||| || ||||| ||||| || || || Sbjct 2039 TTGTCGATGGTATCGGAGGACTCGACTTCAAGGGTGATGGTCTTTCCTGTAAG 2091 >seq13337 Length=2187 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | || | ||| ||| || ||||| || ||||||| Sbjct 1739 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1798 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | ||| || || ||||| || ||||| || ||| | ||| Sbjct 1799 AAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGG 1858 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || ||||||||||| ||||| || || | || || ||||| ||| Sbjct 1859 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACT 1918 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAG 288452 || || ||||||||||| || || || Sbjct 1919 TCAAGGGTGATCGTCTTGCCTGTGAG 1944 Score = 93.3 bits (102), Expect = 1e-13 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | || || || |||| ||| || |||||||| || || ||||| Sbjct 2034 TCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGC 2093 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || ||||| | ||| ||||| || ||||| | |||||||||| || Sbjct 2094 CAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGG 2153 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||| || || ||||| || || || ||| Sbjct 2154 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179281998220242