Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5648 82.4 9e-11 >seq5648 Length=23685 Score = 82.4 bits (90), Expect = 9e-11 Identities = 214/318 (67%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 172651 ATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACAT-CTTGA-TACTCCTTA 172708 ||| ||||| ||||| | | |||||| ||||| | | | | || || || | ||| Sbjct 21973 ATCGGTCATGATCATTAAACTACCATATCGAAGA--GAATCCCTACTAGAGTATTTTTTA 21916 Query 172709 CCCTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGA-GTTG 172767 |||||||||||||||| ||| | |||| || ||||| | | || | || |||| Sbjct 21915 CCCTGTTGAAGACCCATGATTTGTTTGATATG-TTGAATTTCAGCATTCGAGAGAAGTTG 21857 Query 172768 CGC--CACTGAAGCATCGCGGACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAG 172825 || |||| ||| || ||||| || | || || | || ||||| || || || Sbjct 21856 AGCACCACT--AGCTTCTCGGACGTTAAGAAGTTTACCCCTAAGCGGGAAAACGCCATAA 21799 Query 172826 TGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCC 172885 | ||||||||| | || || | ||||||||||| | || || || ||||| ||||| Sbjct 21798 TTATCACGACCGATAACCGATAATCCAGCAACTGCTAAGGATTTGGCTGAATCCCCCTCG 21739 Query 172886 GTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAAC 172945 || | ||| | ||||| | | ||| || | || || || || || ||||| || || Sbjct 21738 GTTAAGATCAATGTACAATCTGCAGCTTTTCGTGTTCCAGCATTATTAGCATCTTCTAAT 21679 Query 172946 TTGGGAATACCAGTAATT 172963 || || || |||||| Sbjct 21678 TTCACTATTCCTGTAATT 21661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597169622558120