Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5107 89.7 6e-13 seq13340 86.0 7e-12 >seq5107 Length=2524 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| | ||| | |||||||| | ||| |||||||||||| ||||||| ||| Sbjct 1021 CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCC 1080 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || || ||||| ||||| || || || ||||| || || | ||| Sbjct 1081 AAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGG 1140 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| || |||| ||| | | | ||||| ||||| || Sbjct 1141 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCCGATGATTCGAC 1199 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTA 42186 || | |||||||||||||| |||| Sbjct 1200 CTCCAAAGTGATGGTTTTGCCAGTTA 1225 >seq13340 Length=1591 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| ||||| | |||||| ||| |||||| || || ||||| || |||| || || | Sbjct 234 ACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 293 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | |||||||||||| || || | |||||| || || | || | | ||||| Sbjct 294 GTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTT 353 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 ||| ||| ||| |||| ||| | | | |||||| || || || || | |||| Sbjct 354 GTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGA 412 Query 42172 TGGTTTTGCCCGTTAG 42187 |||| ||||| || || Sbjct 413 TGGTCTTGCCGGTAAG 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543045497247760