Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq13338 100 3e-16 seq5107 96.9 3e-15 seq13337 86.0 6e-12 seq13340 84.2 2e-11 >seq13338 Length=675 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||||||||| || || || || |||||||||||||| || | || || ||||| Sbjct 528 AGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGGCCGTCT 587 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||| ||| | || || ||||| ||||| || ||||| ||||| || ||| Sbjct 588 TCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGAATACCTTCCTTGTCT 647 Query 64352 TGTATTTT 64359 || || || Sbjct 648 TGAATCTT 655 >seq5107 Length=2524 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| |||| || || || || |||||||||||||| || | ||| || |||| Sbjct 1901 AGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCC 1960 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| |||||||||||| | || || ||||| || || || ||||| || || || ||| Sbjct 1961 TCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCT 2020 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| || || ||||| | || | |||| Sbjct 2021 TGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCAAGGGTGATGGTC 2080 Query 64412 TTGCCGGT 64419 || || || Sbjct 2081 TTTCCTGT 2088 >seq13337 Length=2187 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | | ||| || | ||||| || ||||||||| Sbjct 1769 GTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCTTCGAGTTGCTTGCCG 1828 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||| || ||||| || || || || ||||| || ||||| | |||| ||||| Sbjct 1829 GCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTG-AATTTTCGCTTT 1887 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 || || | || |||| || || ||||| | || | |||||||| || Sbjct 1888 GACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCTTGCCTGT 1941 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || ||||| ||||||||||| || | || || | ||| Sbjct 2050 AGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCT 2109 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| |||||| | || | ||||| || || ||||| |||||||| || ||| Sbjct 2110 TCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 2169 Query 64352 TGTATTTT 64359 || || || Sbjct 2170 TGGATCTT 2177 >seq13340 Length=1591 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||| | || || || || || |||||||| || || | |||||| ||||||| Sbjct 240 CACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTC 299 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | |||||| || ||| | || | ||||| || || || ||||| ||||| || ||||| Sbjct 300 CAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTG 359 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || ||| ||| || || | || || | || || || | ||| | |||||| Sbjct 360 GATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTT 419 Query 64414 GCCGGT 64419 |||||| Sbjct 420 GCCGGT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499490915647160