Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5107 102 8e-17 seq13338 96.9 3e-15 seq13337 93.3 4e-14 >seq5107 Length=2524 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| ||||| | | | |||||||||||||||||||| | | | Sbjct 1021 CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCC 1080 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| ||||| || || | | |||||||||||||||| ||||| || Sbjct 1081 AAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGG 1140 Query 138508 ATACCTTCTTTGTC 138521 || ||||| ||||| Sbjct 1141 ATTCCTTCCTTGTC 1154 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| ||||| | | | ||||| || ||||||||||||||| | ||||| |||||| Sbjct 1617 AACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTC 1676 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 ||||||||||||| | |||||| ||| ||||| || | || || ||||| ||||| Sbjct 1677 CAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTG 1736 Query 138525 GATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTT 138584 ||| || ||| | | || | ||||| | ||| ||||| || | || | ||| || Sbjct 1737 GATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTT 1796 Query 138585 ACCAGTCAG 138593 ||| || || Sbjct 1797 ACCGGTGAG 1805 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || ||||| | | |||||||| || |||||||||||| Sbjct 1308 CCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1367 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || |||||||| |||| | |||| ||||| |||||||| ||||| Sbjct 1368 AGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1427 Query 138508 ATACCTTCTTTGTC 138521 || || || ||||| Sbjct 1428 ATGCCCTCCTTGTC 1441 >seq13338 Length=675 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | ||| ||||| | | | ||||| || ||||||||||||||| Sbjct 227 CCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 286 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || | ||||||||||| | |||||||||| ||||| || || || Sbjct 287 AGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGG 346 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || ||| | | || | ||||| | ||| ||||| Sbjct 347 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACT 406 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAG 138593 || | || | ||| ||||| || || Sbjct 407 TCCAGAGTGATCGTCTTACCGGTGAG 432 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | |||| ||| | | | |||||||| ||||||||||| || Sbjct 513 CCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCA 572 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| |||||||| || || | | |||| || |||||||||||||| || Sbjct 573 AGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGA 632 Query 138508 ATACCTTCTTTGTC 138521 |||||||| ||||| Sbjct 633 ATACCTTCCTTGTC 646 >seq13337 Length=2187 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| | || | | ||||||||||| |||||||| ||| | Sbjct 2035 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2094 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || |||||||| || |||| | |||||| ||||||||| |||||||| Sbjct 2095 AGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGG 2154 Query 138508 ATACCTTCTTTGTC 138521 || ||||| ||||| Sbjct 2155 ATTCCTTCCTTGTC 2168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496109557384080