Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq13339 109 5e-19 seq13340 98.7 9e-16 seq5107 91.5 1e-13 >seq13339 Length=377 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||| | |||| ||| | || ||||||||||| || ||||| || | Sbjct 26 TCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGC 85 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || || || ||||| || | ||||| || ||||| || || || Sbjct 86 AAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGG 145 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || |||||||| ||| ||| ||||| |||| || | |||||| | ||||| Sbjct 146 GATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTG-TCAATGGTGTCGGAGGACTCGA 204 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||| | ||| | |||||||||||||| Sbjct 205 CTTCCAAGGTGATCGTTTTGCCGGTCA 231 >seq13340 Length=1591 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || ||||| | ||| | || ||||| || || || ||||| ||| || Sbjct 223 CCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 282 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | ||| || ||||| ||||||||||||| ||||| || || Sbjct 283 AAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGA 342 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || |||||||| ||| || ||||| |||| || | |||||| | | |||||| Sbjct 343 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTG-TCAATGGTGTCGGAAGACTCGAC 401 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | || | || |||||||| ||| Sbjct 402 CTCAAGAGTGATGGTCTTGCCGGTAAGA 429 >seq5107 Length=2524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | ||| | |||| ||| | || ||||||||||| || ||||| || | Sbjct 2180 TCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGC 2239 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||| | || || || || ||||| || | ||||| || ||||| || || || Sbjct 2240 AAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGG 2299 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || |||||||| || ||| ||||| |||| || | |||||| | ||||| Sbjct 2300 AATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTG-TCAATGGTGTCAGAGGACTCGA 2358 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCA 127091 |||| | | | | ||||||||| |||| Sbjct 2359 CTTCCAAGATGATCGTTTTGCCAGTCA 2385 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||| ||||| || | || | ||||| || | || || | | || ||||||||||| Sbjct 720 TGCACCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATC 779 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | || || ||| ||| || || || || || ||| | || | || |||||||| || Sbjct 780 GGACAAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGG 839 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || ||||||||||| ||||||| ||||| | |||| ||||| || || Sbjct 840 TGGGATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTC 899 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 ||||||| ||| | ||| ||||| || || Sbjct 900 AACTTCGAGGGTGATCGTCTTGCCTGTAAG 929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475354351697360