Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq13339 105 6e-18 seq13340 104 2e-17 seq5107 100 3e-16 >seq13339 Length=377 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | || ||||| || || || || |||||||| || || || Sbjct 24 ATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCC 83 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||| ||| ||||| || | ||||| ||||||||||| || Sbjct 84 GCAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGG 143 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||| || || |||| || | || | ||||||||| ||||| Sbjct 144 GGGATACCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCAATGGTGTCGGAGGACTC 202 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||||| | || | |||||||||||| Sbjct 203 GACTTCCAAGGTGATCGTTTTGCCGGT 229 >seq13340 Length=1591 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||||| ||||||| || || ||||| ||||| || || ||| Sbjct 220 ATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCG 279 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||| || || || || | |||||||| || || || || Sbjct 280 GCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGG 339 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||| || ||| |||| || | || | ||||||||||||||| Sbjct 340 GGAATACCTTCCTTGTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTC 398 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 ||| || ||||| | || |||||||| ||| Sbjct 399 GACCTCAAGAGTGATGGTCTTGCCGGTAAGA 429 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/112 (78%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| ||||| || || || || || || ||||||||||| |||| || | Sbjct 685 ATCAAACGTTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGA-CGTT 743 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||||||||| ||||| ||||||||||| | ||||| ||||| ||| Sbjct 744 GTCGATGGTGTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGTAAGA 795 >seq5107 Length=2524 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | || ||||| || ||||| || |||||||| || || || Sbjct 2178 ATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCC 2237 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || |||| ||| ||||| || | ||||| ||||||||||| || Sbjct 2238 GCAAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGG 2297 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || |||||||| || |||| || | || | |||||| || ||||| Sbjct 2298 GGAATACCTTCCTTGTCTTGAATCTTCGCCTTGA-CGTTGTCAATGGTGTCAGAGGACTC 2356 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||||| | | | ||||||||| || Sbjct 2357 GACTTCCAAGATGATCGTTTTGCCAGT 2383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451863988664440