Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5107 109 5e-19 seq13339 105 7e-18 seq13340 98.7 1e-15 seq13337 98.7 1e-15 seq20 98.7 1e-15 >seq5107 Length=2524 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || |||||||| | || || ||| | |||| | | | |||| | || Sbjct 1513 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACG-TCAA 1455 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || |||| ||||| ||||| ||||| | |||||||| || ||||| | || || Sbjct 1454 GGCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGG 1395 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||||| || || |||| ||||||||| ||||||||||||||| ||||| | || || Sbjct 1394 AAAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACT 1335 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| || ||| | |||| || Sbjct 1334 CCATTTGGTCCTCCGTCTCCGAGGAGG 1308 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || |||||||| |||| | | || |||||| || | |||| | | | |||| | || | Sbjct 2383 ACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACG-TCAAGGC 2325 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| || || |||||| | ||||| || || | |||| || || || Sbjct 2324 GAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 2265 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||| |||| |||| || ||||||||||||||||| || | || || || Sbjct 2264 GCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTTCA 2205 Query 38447 TTTGGTGCTGCG 38458 | |||| || || Sbjct 2204 TCTGGTTCTCCG 2193 >seq13339 Length=377 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || |||||||| |||||| | || |||||| || |||||| | | | |||| | || | Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACG-TCAAGGC 171 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| || || || ||| | ||||| || || | |||| || || || Sbjct 170 GAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 111 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||| |||| |||||||| ||||||||||||||||| || |||| || || Sbjct 110 GCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCA 51 Query 38447 TTTGGTGCTGCG 38458 | |||| || || Sbjct 50 TCTGGTTCTCCG 39 >seq13340 Length=1591 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || || ||||| |||||||| | || |||||| | |||||| | | | |||| | || Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACG-TCAA 370 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | ||| |||| ||||| || || |||||| | || |||||||| | || | || || Sbjct 369 GGCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGG 310 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 || ||| |||| |||| |||||| | ||||||||||||||| ||||| | || | Sbjct 309 TAAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTT 250 Query 38444 GCATTTGGTGCTGCGT 38459 |||| | ||| | ||| Sbjct 249 GCATCTCGTGTTACGT 234 >seq13337 Length=2187 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| ||||| || |||||| | || || || ||| |||| | | | |||| | || Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACG-TCAA 1886 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || ||||| | ||||| || || || ||| | || || || || ||||||| ||| || Sbjct 1885 AGCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGG 1826 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| || || || || | || ||| | ||||||||||||||| |||||| | || || Sbjct 1825 CAAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCT 1766 Query 38444 GCATTTGGTGCTGCGT 38459 || ||||| || ||| Sbjct 1765 CCACTTGGTCCTCCGT 1750 >seq20 Length=7811 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 |||||| |||||||| || || || || || | | || |||||| | || | ||| Sbjct 2357 GATTTGGAAGCCGTAGAAACATCGAGCTTCAGCGATTTGAACTTCTCCACTAAACCTCTC 2298 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 || || || ||||||||||| || ||| ||| || || || || || || || ||||| Sbjct 2297 GATGAGGTTCTCGTTGACGATCCCATCGGAGGCAGCAAAGAAAGCGAGGACATGTTTGAT 2238 Query 133338 GAAATGGCGCTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| || ||||| | ||||| ||||||||| || | ||||| ||||| || Sbjct 2237 GAAGTGTTTCTCGTCCCCATTCAACTTATTATCCCAGTCGTGCATATCCTTCGACAGATC 2178 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 | |||||| | |||||||| || || ||||| Sbjct 2177 GATTTCCTCGGCTGTCCAAAAGGAAGCTTCGGC 2145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500018753029760