Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5107 109 2e-18 seq13337 100 1e-15 seq5648 96.9 1e-14 seq13338 95.1 5e-14 seq17959 86.0 2e-11 >seq5107 Length=2524 Score = 109 bits (120), Expect = 2e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 391074 ACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAA 391133 ||||| ||||| || ||| | || || |||||||| || | ||||| | || Sbjct 1223 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1164 Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||| ||||||||||| || || |||||||| ||| |||| || | || || Sbjct 1163 AAGATCCAAGACAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1104 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 |||||||| ||||| |||||||||| |||| || ||| | ||||| | || ||||| Sbjct 1103 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCAT 1044 Query 391254 TTAGT 391258 || || Sbjct 1043 TTGGT 1039 Score = 96.9 bits (106), Expect = 1e-14 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || || || || ||||| || || || || |||| ||| || | | || Sbjct 2091 CTTACAGGAAAGACCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGACAATGTCAAG 2032 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||||||||| || ||||| || |||||||| ||| | || || | || Sbjct 2031 GCCAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGC 1972 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || |||||||| || || |||| | || ||||| || ||| | ||||| | || ||| Sbjct 1971 AAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTT 1912 Query 391251 CACTTAGT 391258 |||||||| Sbjct 1911 CACTTAGT 1904 Score = 89.7 bits (98), Expect = 2e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || ||||| || || ||||| || || ||||| || || | ||||| | | ||| Sbjct 1805 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAAA 1746 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||| |||||||| || || | ||||||||||||||||| || | || Sbjct 1745 GCCAAGATCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCGGT 1686 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||||| || || || | || | || || || || ||| | || || | || ||| Sbjct 1685 AAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 1626 Query 391251 CACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || || || | |||| |||| |||||| Sbjct 1625 CATTTGGTTCTCCGACTCCAAGGAGGAATACA 1594 >seq13337 Length=2187 Score = 100 bits (110), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || || || || || ||||| |||||||| ||| | ||| || | ||| Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1885 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 ||||||||||| |||||||| || || |||||||| |||||| | |||||| | || Sbjct 1884 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1825 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || ||||| |||||||| | || ||| | || || || || | ||||| | || || Sbjct 1824 AAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTC 1765 Query 391251 CACTTAGT 391258 ||||| || Sbjct 1764 CACTTGGT 1757 Score = 100 bits (110), Expect = 1e-15 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || ||||| ||||||||||| ||||| |||||||| |||||||| || | || || Sbjct 2177 AAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAG 2118 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| |||||||| ||||| |||| ||||| || || | ||||| | || |||||| Sbjct 2117 CAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTTCAC 2058 >seq5648 Length=23685 Score = 96.9 bits (106), Expect = 1e-14 Identities = 286/438 (65%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 364566 ATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATTTTTTATGGAGCAAAT 364625 |||||||| | || ||||| || ||||| |||| | ||| | || | || || | Sbjct 22678 ATTCCATCAATGGTAGATGGTTTCAAACCCGGTCAACGTAAAGTATTATTTG---CATGT 22734 Query 364626 TTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGCAGGTT-TTGTATCTGA 364684 || | | || | |||| | || | |||||||| ||||||| ||| | |||| || || Sbjct 22735 TTTAAAAGAAAATTGAAAGCTGAAATTAAAGTAGCACAATTAGGAGGATATTGT-TCAGA 22793 Query 364685 CCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAATAATTGGAATGGCACA 364744 | ||| |||||||| || || |||||| | | | | ||| | ||| | || || Sbjct 22794 ACATTCAGCCTATCATCATGGAGAAGCAAGTCTCACTCAAACTATAGTCGGATTAGCTCA 22853 Query 364745 AAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTTGGAAGTCG 364804 ||||||||| |||||||||||| | ||| | || ||| || || ||||| || | ||| Sbjct 22854 AAATTTTGTCGGAAGTAATAATATTAATGTCCTCTCACCTAATGGCCAATTCGGTACTCG 22913 Query 364805 AGTAATGGGAGGTAAAGATTCTGCCAGCCCACGTTATATTTGGACCAAACTTGAAAAAGT 364864 | || ||||||||| | || || | ||||||| || || | ||||| | Sbjct 22914 TGCCTCTGGTGGTAAAGATGCAGCTTCTGCAAGGTATATTTTCACTAATGTAGAAAAGAT 22973 Query 364865 GGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAATGATGATGG 364924 | || | || || | | |||| || | ||||| ||| | | |||||||| Sbjct 22974 TACTAGAGTGATTTTCCCAGCATCAGATGATAACGTCTTAAACTATTTAACGGATGATGG 23033 Query 364925 ATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGTAAATGGAGC 364984 | | || || |||| ||| | || || | || ||| | |||| |||||| | Sbjct 23034 TACACAAATCGAGCCGGAATGGTATATCCCAATCTTACCGATGGTACTAGTGAATGGATC 23093 Query 364985 AACAGGCATTGGTACTGG 365002 | || ||||| ||||| Sbjct 23094 TAGTGGGATTGGAACTGG 23111 >seq13338 Length=675 Score = 95.1 bits (104), Expect = 5e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || ||||| || || ||||| || || ||||| || || | ||||| | ||| Sbjct 432 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 373 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||||||||||||||| || || |||||||||||| |||| || | || Sbjct 372 GCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGT 313 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 |||||| | ||||| || | || | || || || || ||| | || || | || ||| Sbjct 312 AAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 253 Query 391251 CACTTAGTATTAAGACTGAGAGGATAAATACA 391282 || || || | |||| ||||| ||| || Sbjct 252 CATTTGGTTCTCCGACTTCGAGGAGGAATGCA 221 >seq17959 Length=8941 Score = 86.0 bits (94), Expect = 2e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 451321 TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGC 451380 |||||| || || || ||||| || ||||| || || || ||||||||||| |||||||| Sbjct 5091 TGCAGTTATCACCGTCCCCGCCTACTTCAACGACGCCCAGCGGCAAGCAACCAAAGATGC 5150 Query 451381 AGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || |||||| | |||| || || |||| || || || || || |||||||| Sbjct 5151 TGGTGCAATTGCTAAGCTGGATGTCCTCCGTGTTATCAACGAGCCCACCGCTGCTGCTCT 5210 Query 451441 AGCATATGGACT 451452 |||||||| || Sbjct 5211 GGCATATGGTCT 5222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975094691015012