Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01]
24,639 sequences; 68,656,445 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq3966 161 1e-34
seq12037 143 3e-29
seq5648 131 2e-25
seq6675 96.9 4e-15
seq4660 96.9 4e-15
seq9270 93.3 5e-14
>seq3966
Length=13626
Score = 161 bits (178), Expect = 1e-34
Identities = 184/245 (75%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 7900 CATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAA 7959
||| ||| |||||| | |||| ||| |||| ||| || |||||||| ||||| ||
Sbjct 4411 CATGTCGGATTGGACTTCGGCGTCCTCAAATTTTCGTCCTATCAGACGCTTGGCATCGAA 4352
Query 7960 AACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019
|| |||| | ||||||||||| ||||||||| || || || ||||| ||||||||
Sbjct 4351 GACGGTGTGGTGAGGGTTCATGGCGACTTGGTTCTTGGCGGCATCACCGATCAGACGTTC 4292
Query 8020 ATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAAT 8079
| | | | || || || ||||| || || || |||||||| ||||||||||| |||||
Sbjct 4291 -TGAGT--CGGTGAAAGCAACGTAGGAAGGAGTTGTTCGATTTCCTTGGTCGTTGGCAAT 4235
Query 8080 AATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAAT 8139
|| || || || || |||||||| || || ||||| || || || || || | ||||||
Sbjct 4234 GATCTCAACTCGATCATTTTGCCATACACCAACGCAGGAGTAGGTGGTACCGAGATCAAT 4175
Query 8140 ACCGA 8144
|||||
Sbjct 4174 ACCGA 4170
Score = 120 bits (132), Expect = 4e-22
Identities = 194/279 (70%), Gaps = 0/279 (0%)
Strand=Plus/Minus
Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186
|| || || || || |||||||| | ||||| || | || || | || || ||||||
Sbjct 5401 GGAATACGAGTGGAACCACCGACAAGGACGATCTCGTGGACATTGGCCTTGTCAATCTTT 5342
Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246
|||||||| || || ||||| || ||||| || ||||| | ||| | || ||
Sbjct 5341 GAGTCTCGGAGAACCTTCTCGACGGGCTCCATGGTCTTGCGGAAAAGGTCATTGCAGAGC 5282
Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306
|| || ||||| |||||||| | ||| || ||||| || | || || | | || ||
Sbjct 5281 TCTTCGAAACGAGCACGGGTGAGGGAAGTGTAGAAGTCGATACCCTCAAAAAGAGAGTCG 5222
Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366
||||| |||| ||||| || | || || || || || || || ||||| || || ||
Sbjct 5221 ATTTCGATGGAGGTTTGGGCGGCAGAGGACAAGGTACGTTTGGCACGCTCGCAAGCAGTG 5162
Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405
|| | |||||||| |||||| | ||| ||| | ||||
Sbjct 5161 CGCAGACGACGAACGGCACGAGCGTTTGAGGAGAGATCT 5123
>seq12037
Length=29357
Score = 143 bits (158), Expect = 3e-29
Identities = 523/813 (64%), Gaps = 17/813 (2%)
Strand=Plus/Minus
Query 7014 CCGTTAAGAT-GGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072
||| ||||| ||| |||||||| | || ||||| ||||| ||||| |||||||| ||
Sbjct 6122 CCGGTAAGAACGGCAGCTTGGACGGCAGCACCGTAAGCGACAGCCTCGTCGGGGTTGATG 6063
Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132
| || |||| || || ||| |||| || | || ||| || || |||||
Sbjct 6062 CTCTTGTTCAATTGACGTCCACCAAAGAAATCGGAAACCAGAGATTGGATCTTGGGGATA 6003
Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192
|| || ||||||||||| | ||||| || | ||||| | || || ||||| | |||
Sbjct 6002 CGGGTGGATCCACCGACAAGGACGATATCTTCAACTTTGGCCTTGTCAATCTTGGCGTCC 5943
Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAA-GTC-CATACACAGTTCCT 7250
|| || || || || || | | | ||||| || | | | || |
Sbjct 5942 TTGAGAACCTTGTCAACGGGGTCGAGAGTTGATCGGAAGGTTGTGGCGTTGATC--TCTT 5885
Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310
| || || || || | |||| | |||| ||| || | | | | || || | ||
Sbjct 5884 CGAATCGGGCTCGAGAGATGGCAGATGAGAAGTCAGTTCCTTGGAAGAGGGAGTCGACTT 5825
Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370
| | ||| ||||| | ||||| | ||||| || || ||||| || || | || |
Sbjct 5824 CGACGGTGGTTTGGGTAACGGAAGAGAGTGTTCGTTTGGCTCGCTCGCATGCAGAGCGAA 5765
Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT 7430
||||||||||||||| | | || ||| || || || || || ||||| |
Sbjct 5764 GACGACGAAGGGCACGGGCATCTCCATCAATGTCGAGTTTGGTCTTTCGCTTGAACTCGT 5705
Query 7431 CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490
||||||| |||||| ||||| || || || |||||||| || || || |
Sbjct 5704 TTTTGAAGTGTTCAAGGAGAGCATTGTCGAAGTCCTCGCCTCCCAAGTGGGTGTCACCAG 5645
Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550
|||| |||||||| || | ||| || | ||| | | || ||||| || ||||
Sbjct 5644 CGGTGGCTTTGACAGTGAAAACACCACCAGCGATGGAAAGGAGAGAGACATCGAAAGTAC 5585
Query 7551 CACCACCCAGGTCAAAAATGAGTAC-GTTCGTATCGTC--GTCTTTGTT---------CT 7598
|||| |||| ||| ||||| || || |||||| | || ||||| || ||
Sbjct 5584 CACCTCCCAAGTCGAAAATCAGGACGGTTCGTTCCTTCTTTTCTTTTTTCTCACTGGCCT 5525
Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658
| | |||||||| ||||| || || || || || || || || ||||| || || ||
Sbjct 5524 CACCAAGACCGTAGGCGATGGCAGCGGCGGTGGGCTCGTTGATGATACGGAGCACGTCCA 5465
Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718
| || || |||| | ||||| || || | || || || ||||| |||||||| |
Sbjct 5464 GACCGGCGATAGCACCAGCATCCTTGGTGGACAACCGCTGTGAGTCGTTGAAGTAGGCAG 5405
Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778
| || || | ||| || | | |||| | ||| || | | | || || | || || |
Sbjct 5404 GCACGGTGATGACGGCCTTCTTGACCTCCTTGCCCAACTTGGTCTCGGCAGTCTCCTTGA 5345
Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811
||||| || ||||| | || ||||||| ||
Sbjct 5344 GCTTGGTGAGGACCATGGCGGAGATCTCTTGAG 5312
>seq5648
Length=23685
Score = 131 bits (144), Expect = 2e-25
Identities = 313/468 (67%), Gaps = 18/468 (4%)
Strand=Plus/Minus
Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181
|| || | ||||||| | ||||||| |||||| |||| || ||||| || || |
Sbjct 23150 ATCTCGATCGGATTATAGTTCGGTATATCTGAACTCCATCCAGTTCCAATCCCACTAGAT 23091
Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACCG 183241
||||| || | || ||||||| || || | ||| | || || ||||||||| ||||
Sbjct 23090 CCATTCACTAGTACCATCGGTAAGATTGGGATATACCATTCCGGCTCGATTTGTGTACCA 23031
Query 183242 TCGTCGTCGAGATAGTTTAATACTGGATCATCTT----TGGGATCAAAA----AGTATTC 183293
|| || | ||||||||| || ||||||| ||||| | | |||| ||
Sbjct 23030 TCATCCGTTAAATAGTTTAAGACGTTATCATCTGATGCTGGGAAAATCACTCTAGTAATC 22971
Query 183294 TCGCGTTTTTAGTCAATTTTGTAAATATATACCTGGTTTGACTCGCGTCTTTACCACCCA 183353
| ||| || || || || || |||||||| | | || |||||||||||
Sbjct 22970 T----TTTCTA--CA--TTAGTGAAAATATACCTTGCAGAAGCTGCATCTTTACCACCAG 22919
Query 183354 TGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAA 183413
| ||| ||||| ||||| ||| ||| ||| | |||||||||||| || ||
Sbjct 22918 AGGCACGAGTACCGAATTGGCCATTAGGTGAGAGGACATTAATATTATTACTTCCGACAA 22859
Query 183414 AATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCACCGTGGTGATACGATG 183473
|||| || |||||| || || || | | | | |||| || || ||||| | ||
Sbjct 22858 AATTTTGAGCTAATCCGACTATAGTTTGAGTGAGACTTGCTTCTCCATGATGATAGGCTG 22799
Query 183474 TTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGT-AAGATTCTTT 183532
| ||| ||| ||| | ||||||| || || || ||||||| | | || ||||||
Sbjct 22798 AATGTTCTGAACAATATCCTCCTAATTGTGCTACTTTAATTTCAGCTTTCAATTTTCTTT 22739
Query 183533 GTGAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATCT 183580
| ||||| || |||| ||||| ||||| ||||| |||||||||
Sbjct 22738 -TAAAACATGCAAATAATACTTTACGTTGACCGGGTTTGAAACCATCT 22692
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/225 (70%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 184206 CACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCAC 184265
|||| || || || ||||| | ||||||||||||||| ||||| || |||| |||||
Sbjct 21851 CACTAGCTTCTCGGACGTTAAGAAGTTTACCCCTAAGCGGGAAAACGCCATAATTATCAC 21792
Query 184266 GACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAA 184325
|||| | ||| || | ||||||| ||| | | ||| || ||||| || ||||| | |
Sbjct 21791 GACCGATAACCGATAATCCAGCAACTGCTAAGGATTTGGCTGAATCCCCCTCGGTTAAGA 21732
Query 184326 TAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAA 184385
| | ||||| | ||| | | || || || ||||| ||||| || | ||| |
Sbjct 21731 TCAATGTACAATCTGCAGCTTTTCGTGTTCCAGCATTATTAGCATCTTCTAATTTCACTA 21672
Query 184386 TACCCGTTATTTTTGAT--TTACGAGACCCATCTGtttttttCAA 184428
| || || ||| ||||| || | || ||||| ||||| || ||
Sbjct 21671 TTCCTGTAATTCTTGATCGTTTC--GATCCATCGGTTTTCTTTAA 21629
>seq6675
Length=9441
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 22697 AACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGTCATGCACGCG 22756
||||| ||||||||||| | || || | || |||||||||||||| ||||| |
Sbjct 3258 AACAAGAATGTTTATACTTAGGAAATTTGTCAGCAAAACGAGATTGGGGCCATGCCAAAG 3317
Query 22757 ATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGATTTTGTTATTG 22816
|||| || | |||||||||| || |||||||||||| ||||||| ||||| || |||
Sbjct 3318 ATTATGTAGAGGGTATGTGGAAGATGTTACAACAAGATCAACCGGATGATTTCGTACTTG 3377
Query 22817 CAACAGGCGTAAC 22829
| || || | |||
Sbjct 3378 CTACTGGTGAAAC 3390
>seq4660
Length=19697
Score = 96.9 bits (106), Expect = 4e-15
Identities = 179/259 (69%), Gaps = 9/259 (3%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||| || |||||||| || || || ||||| || ||| ||||||| |||
Sbjct 17443 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCAGCGGTAGCCAAGACCTCAAAGACACC 17384
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572
| || || || | || ||||| || || ||||| || || || | |||||
Sbjct 17383 CTCATCGATCGATAGTAGTGAGACATCGAAAGTTCCACCTCCTAGATCGTATACAATGAT 17324
Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632
| || | | || ||| |||| |||| || ||||| || || || || || |||||
Sbjct 17323 TTGGTGC-TCTC----CCTTCGTTC-TATCCAGTCCGTAGGCAATCGCTGCGGCAGTTGG 17270
Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
||| || | ||| || || ||| || || ||||| || | ||||| || || |||||
Sbjct 17269 TTCGTTGACAATTCGGAGTACGTTAAGTCCGGCAATCGTACCGGCATCCTTGGTAGCTTG 17210
Query 7693 TCGTTGCGAATCGTTAAAG 7711
|| || | ||||| |||
Sbjct 17209 ACGCTGAGCGTCGTTGAAG 17191
>seq9270
Length=9228
Score = 93.3 bits (102), Expect = 5e-14
Identities = 292/443 (66%), Gaps = 21/443 (5%)
Strand=Plus/Minus
Query 11251 ACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGGGGCGTAATAACGCATCG 11310
||||||||| | ||| || | |||||| |||||||| || | | |||||| |
Sbjct 6952 ACATCAGGTCTATCAACAGCGATATGACGATCGAATCTACCTGGTCTGAGTAACGCTTTA 6893
Query 11311 TCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATTT-CAGTTTCATTCTCGAA 11369
|| |||| ||| ||| || || || ||| || || | | | | || | | |||||
Sbjct 6892 TCTAGTACATCAGCACGATTAGTACCAGCTAGGACGACGACATGCTGGTT-AGTATCGAA 6834
Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCGCAAA 11429
|| |||||||| || || ||| |||| || ||| || ||||||||| | |
Sbjct 6833 GCCGTCCATTTCCACTAGTAGTTGATTAAGCGTAGATTCTCGTTCATCGTTTCC-----A 6779
Query 11430 CCCATTCATACTTCTTTTC--------TTACCAATCGCATCAATTTCATCTATAAAGATA 11481
||||| | || ||||| |||||||||||||| || ||||||| ||| | |
Sbjct 6778 CCCATGGCTCCTGATTTTCCTCGAGCTTTACCAATCGCATCTATCTCATCTACAAATACA 6719
Query 11482 ATACACGGTTGATT-TTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTAC 11540
|| |||||| ||| ||| | || | |||||| ||| || |||| || |||||
Sbjct 6718 ATGCACGGTGCATTCTTCTTG-GCTGTTGCAAATAAATCTCGTACTCGAGATGGTCCTAC 6660
Query 11541 GCCTACAAACATTTCAACGAACGATGACCCCGAACACTGA-ATAAAAGGAACGGAAGATT 11599
|| |||||||| || || || ||| || | | || || | || || || | ||
Sbjct 6659 TCCGACAAACATCTCTACAAATTCTGATCCTG-ATACCGATAGGAATGGTACACCTGCTT 6601
Query 11600 CACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAAT- 11658
| |||||| |||| |||| | || || || || ||||| ||||| ||| ||
Sbjct 6600 CTCCCGCTGTAGCTTTGGCTAGTAAGGTCTTCCCCGTTCCTGGCGGACCTG-AAATCATA 6542
Query 11659 GCACCCCTTGGTATTTTAGCACC 11681
|| || | |||||||| || ||
Sbjct 6541 GCTCCTTTCGGTATTTTGGCTCC 6519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634937187036760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |