Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3966 161 1e-34 seq12037 143 3e-29 seq5648 131 2e-25 seq6675 96.9 4e-15 seq4660 96.9 4e-15 seq9270 93.3 5e-14 >seq3966 Length=13626 Score = 161 bits (178), Expect = 1e-34 Identities = 184/245 (75%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 7900 CATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAA 7959 ||| ||| |||||| | |||| ||| |||| ||| || |||||||| ||||| || Sbjct 4411 CATGTCGGATTGGACTTCGGCGTCCTCAAATTTTCGTCCTATCAGACGCTTGGCATCGAA 4352 Query 7960 AACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 || |||| | ||||||||||| ||||||||| || || || ||||| |||||||| Sbjct 4351 GACGGTGTGGTGAGGGTTCATGGCGACTTGGTTCTTGGCGGCATCACCGATCAGACGTTC 4292 Query 8020 ATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAAT 8079 | | | | || || || ||||| || || || |||||||| ||||||||||| ||||| Sbjct 4291 -TGAGT--CGGTGAAAGCAACGTAGGAAGGAGTTGTTCGATTTCCTTGGTCGTTGGCAAT 4235 Query 8080 AATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAAT 8139 || || || || || |||||||| || || ||||| || || || || || | |||||| Sbjct 4234 GATCTCAACTCGATCATTTTGCCATACACCAACGCAGGAGTAGGTGGTACCGAGATCAAT 4175 Query 8140 ACCGA 8144 ||||| Sbjct 4174 ACCGA 4170 Score = 120 bits (132), Expect = 4e-22 Identities = 194/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 || || || || || |||||||| | ||||| || | || || | || || |||||| Sbjct 5401 GGAATACGAGTGGAACCACCGACAAGGACGATCTCGTGGACATTGGCCTTGTCAATCTTT 5342 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 |||||||| || || ||||| || ||||| || ||||| | ||| | || || Sbjct 5341 GAGTCTCGGAGAACCTTCTCGACGGGCTCCATGGTCTTGCGGAAAAGGTCATTGCAGAGC 5282 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 || || ||||| |||||||| | ||| || ||||| || | || || | | || || Sbjct 5281 TCTTCGAAACGAGCACGGGTGAGGGAAGTGTAGAAGTCGATACCCTCAAAAAGAGAGTCG 5222 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 ||||| |||| ||||| || | || || || || || || || ||||| || || || Sbjct 5221 ATTTCGATGGAGGTTTGGGCGGCAGAGGACAAGGTACGTTTGGCACGCTCGCAAGCAGTG 5162 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || | |||||||| |||||| | ||| ||| | |||| Sbjct 5161 CGCAGACGACGAACGGCACGAGCGTTTGAGGAGAGATCT 5123 >seq12037 Length=29357 Score = 143 bits (158), Expect = 3e-29 Identities = 523/813 (64%), Gaps = 17/813 (2%) Strand=Plus/Minus Query 7014 CCGTTAAGAT-GGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 ||| ||||| ||| |||||||| | || ||||| ||||| ||||| |||||||| || Sbjct 6122 CCGGTAAGAACGGCAGCTTGGACGGCAGCACCGTAAGCGACAGCCTCGTCGGGGTTGATG 6063 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || |||| || || ||| |||| || | || ||| || || ||||| Sbjct 6062 CTCTTGTTCAATTGACGTCCACCAAAGAAATCGGAAACCAGAGATTGGATCTTGGGGATA 6003 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCT 7192 || || ||||||||||| | ||||| || | ||||| | || || ||||| | ||| Sbjct 6002 CGGGTGGATCCACCGACAAGGACGATATCTTCAACTTTGGCCTTGTCAATCTTGGCGTCC 5943 Query 7193 CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAA-GTC-CATACACAGTTCCT 7250 || || || || || || | | | ||||| || | | | || | Sbjct 5942 TTGAGAACCTTGTCAACGGGGTCGAGAGTTGATCGGAAGGTTGTGGCGTTGATC--TCTT 5885 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 | || || || || | |||| | |||| ||| || | | | | || || | || Sbjct 5884 CGAATCGGGCTCGAGAGATGGCAGATGAGAAGTCAGTTCCTTGGAAGAGGGAGTCGACTT 5825 Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370 | | ||| ||||| | ||||| | ||||| || || ||||| || || | || | Sbjct 5824 CGACGGTGGTTTGGGTAACGGAAGAGAGTGTTCGTTTGGCTCGCTCGCATGCAGAGCGAA 5765 Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT 7430 ||||||||||||||| | | || ||| || || || || || ||||| | Sbjct 5764 GACGACGAAGGGCACGGGCATCTCCATCAATGTCGAGTTTGGTCTTTCGCTTGAACTCGT 5705 Query 7431 CAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCG 7490 ||||||| |||||| ||||| || || || |||||||| || || || | Sbjct 5704 TTTTGAAGTGTTCAAGGAGAGCATTGTCGAAGTCCTCGCCTCCCAAGTGGGTGTCACCAG 5645 Query 7491 CGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTAC 7550 |||| |||||||| || | ||| || | ||| | | || ||||| || |||| Sbjct 5644 CGGTGGCTTTGACAGTGAAAACACCACCAGCGATGGAAAGGAGAGAGACATCGAAAGTAC 5585 Query 7551 CACCACCCAGGTCAAAAATGAGTAC-GTTCGTATCGTC--GTCTTTGTT---------CT 7598 |||| |||| ||| ||||| || || |||||| | || ||||| || || Sbjct 5584 CACCTCCCAAGTCGAAAATCAGGACGGTTCGTTCCTTCTTTTCTTTTTTCTCACTGGCCT 5525 Query 7599 TATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCA 7658 | | |||||||| ||||| || || || || || || || || ||||| || || || Sbjct 5524 CACCAAGACCGTAGGCGATGGCAGCGGCGGTGGGCTCGTTGATGATACGGAGCACGTCCA 5465 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 | || || |||| | ||||| || || | || || || ||||| |||||||| | Sbjct 5464 GACCGGCGATAGCACCAGCATCCTTGGTGGACAACCGCTGTGAGTCGTTGAAGTAGGCAG 5405 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 | || || | ||| || | | |||| | ||| || | | | || || | || || | Sbjct 5404 GCACGGTGATGACGGCCTTCTTGACCTCCTTGCCCAACTTGGTCTCGGCAGTCTCCTTGA 5345 Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 ||||| || ||||| | || ||||||| || Sbjct 5344 GCTTGGTGAGGACCATGGCGGAGATCTCTTGAG 5312 >seq5648 Length=23685 Score = 131 bits (144), Expect = 2e-25 Identities = 313/468 (67%), Gaps = 18/468 (4%) Strand=Plus/Minus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181 || || | ||||||| | ||||||| |||||| |||| || ||||| || || | Sbjct 23150 ATCTCGATCGGATTATAGTTCGGTATATCTGAACTCCATCCAGTTCCAATCCCACTAGAT 23091 Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGATTTGTTTACCG 183241 ||||| || | || ||||||| || || | ||| | || || ||||||||| |||| Sbjct 23090 CCATTCACTAGTACCATCGGTAAGATTGGGATATACCATTCCGGCTCGATTTGTGTACCA 23031 Query 183242 TCGTCGTCGAGATAGTTTAATACTGGATCATCTT----TGGGATCAAAA----AGTATTC 183293 || || | ||||||||| || ||||||| ||||| | | |||| || Sbjct 23030 TCATCCGTTAAATAGTTTAAGACGTTATCATCTGATGCTGGGAAAATCACTCTAGTAATC 22971 Query 183294 TCGCGTTTTTAGTCAATTTTGTAAATATATACCTGGTTTGACTCGCGTCTTTACCACCCA 183353 | ||| || || || || || |||||||| | | || ||||||||||| Sbjct 22970 T----TTTCTA--CA--TTAGTGAAAATATACCTTGCAGAAGCTGCATCTTTACCACCAG 22919 Query 183354 TGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAA 183413 | ||| ||||| ||||| ||| ||| ||| | |||||||||||| || || Sbjct 22918 AGGCACGAGTACCGAATTGGCCATTAGGTGAGAGGACATTAATATTATTACTTCCGACAA 22859 Query 183414 AATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCACCGTGGTGATACGATG 183473 |||| || |||||| || || || | | | | |||| || || ||||| | || Sbjct 22858 AATTTTGAGCTAATCCGACTATAGTTTGAGTGAGACTTGCTTCTCCATGATGATAGGCTG 22799 Query 183474 TTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTCAGATGT-AAGATTCTTT 183532 | ||| ||| ||| | ||||||| || || || ||||||| | | || |||||| Sbjct 22798 AATGTTCTGAACAATATCCTCCTAATTGTGCTACTTTAATTTCAGCTTTCAATTTTCTTT 22739 Query 183533 GTGAAACACGCGTATAACACTTTTCGTTGGGATGGTTTTAAACCATCT 183580 | ||||| || |||| ||||| ||||| ||||| ||||||||| Sbjct 22738 -TAAAACATGCAAATAATACTTTACGTTGACCGGGTTTGAAACCATCT 22692 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 184206 CACTCGCGTCACGCACGTTCTTACATTTACCCCTAAGCGGAAAAACACCGTAATGATCAC 184265 |||| || || || ||||| | ||||||||||||||| ||||| || |||| ||||| Sbjct 21851 CACTAGCTTCTCGGACGTTAAGAAGTTTACCCCTAAGCGGGAAAACGCCATAATTATCAC 21792 Query 184266 GACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAA 184325 |||| | ||| || | ||||||| ||| | | ||| || ||||| || ||||| | | Sbjct 21791 GACCGATAACCGATAATCCAGCAACTGCTAAGGATTTGGCTGAATCCCCCTCGGTTAAGA 21732 Query 184326 TAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAA 184385 | | ||||| | ||| | | || || || ||||| ||||| || | ||| | Sbjct 21731 TCAATGTACAATCTGCAGCTTTTCGTGTTCCAGCATTATTAGCATCTTCTAATTTCACTA 21672 Query 184386 TACCCGTTATTTTTGAT--TTACGAGACCCATCTGtttttttCAA 184428 | || || ||| ||||| || | || ||||| ||||| || || Sbjct 21671 TTCCTGTAATTCTTGATCGTTTC--GATCCATCGGTTTTCTTTAA 21629 >seq6675 Length=9441 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 22697 AACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGTCATGCACGCG 22756 ||||| ||||||||||| | || || | || |||||||||||||| ||||| | Sbjct 3258 AACAAGAATGTTTATACTTAGGAAATTTGTCAGCAAAACGAGATTGGGGCCATGCCAAAG 3317 Query 22757 ATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGATTTTGTTATTG 22816 |||| || | |||||||||| || |||||||||||| ||||||| ||||| || ||| Sbjct 3318 ATTATGTAGAGGGTATGTGGAAGATGTTACAACAAGATCAACCGGATGATTTCGTACTTG 3377 Query 22817 CAACAGGCGTAAC 22829 | || || | ||| Sbjct 3378 CTACTGGTGAAAC 3390 >seq4660 Length=19697 Score = 96.9 bits (106), Expect = 4e-15 Identities = 179/259 (69%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||||||||| || |||||||| || || || ||||| || ||| ||||||| ||| Sbjct 17443 ATCGAAATCTTCTCCTCCCAAGTGAGTGTCACCAGCGGTAGCCAAGACCTCAAAGACACC 17384 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG---GTCAAAAATGAG 7572 | || || || | || ||||| || || ||||| || || || | ||||| Sbjct 17383 CTCATCGATCGATAGTAGTGAGACATCGAAAGTTCCACCTCCTAGATCGTATACAATGAT 17324 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | || | | || ||| |||| |||| || ||||| || || || || || ||||| Sbjct 17323 TTGGTGC-TCTC----CCTTCGTTC-TATCCAGTCCGTAGGCAATCGCTGCGGCAGTTGG 17270 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 ||| || | ||| || || ||| || || ||||| || | ||||| || || ||||| Sbjct 17269 TTCGTTGACAATTCGGAGTACGTTAAGTCCGGCAATCGTACCGGCATCCTTGGTAGCTTG 17210 Query 7693 TCGTTGCGAATCGTTAAAG 7711 || || | ||||| ||| Sbjct 17209 ACGCTGAGCGTCGTTGAAG 17191 >seq9270 Length=9228 Score = 93.3 bits (102), Expect = 5e-14 Identities = 292/443 (66%), Gaps = 21/443 (5%) Strand=Plus/Minus Query 11251 ACATCAGGTAAAGAAACTTGTATTTTACGATCAAATCTACCGGGGCGTAATAACGCATCG 11310 ||||||||| | ||| || | |||||| |||||||| || | | |||||| | Sbjct 6952 ACATCAGGTCTATCAACAGCGATATGACGATCGAATCTACCTGGTCTGAGTAACGCTTTA 6893 Query 11311 TCGAGTATATCGATACGGTTTGTTGCACCTATAACAACAATTT-CAGTTTCATTCTCGAA 11369 || |||| ||| ||| || || || ||| || || | | | | || | | ||||| Sbjct 6892 TCTAGTACATCAGCACGATTAGTACCAGCTAGGACGACGACATGCTGGTT-AGTATCGAA 6834 Query 11370 ACCATCCATTTCTGTTAATAATTGGTTAATTGTTTGTTCACGCTCATCGTTTGCCGCAAA 11429 || |||||||| || || ||| |||| || ||| || ||||||||| | | Sbjct 6833 GCCGTCCATTTCCACTAGTAGTTGATTAAGCGTAGATTCTCGTTCATCGTTTCC-----A 6779 Query 11430 CCCATTCATACTTCTTTTC--------TTACCAATCGCATCAATTTCATCTATAAAGATA 11481 ||||| | || ||||| |||||||||||||| || ||||||| ||| | | Sbjct 6778 CCCATGGCTCCTGATTTTCCTCGAGCTTTACCAATCGCATCTATCTCATCTACAAATACA 6719 Query 11482 ATACACGGTTGATT-TTCACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTAC 11540 || |||||| ||| ||| | || | |||||| ||| || |||| || ||||| Sbjct 6718 ATGCACGGTGCATTCTTCTTG-GCTGTTGCAAATAAATCTCGTACTCGAGATGGTCCTAC 6660 Query 11541 GCCTACAAACATTTCAACGAACGATGACCCCGAACACTGA-ATAAAAGGAACGGAAGATT 11599 || |||||||| || || || ||| || | | || || | || || || | || Sbjct 6659 TCCGACAAACATCTCTACAAATTCTGATCCTG-ATACCGATAGGAATGGTACACCTGCTT 6601 Query 11600 CACCCGCTATAGCACGTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAAT- 11658 | |||||| |||| |||| | || || || || ||||| ||||| ||| || Sbjct 6600 CTCCCGCTGTAGCTTTGGCTAGTAAGGTCTTCCCCGTTCCTGGCGGACCTG-AAATCATA 6542 Query 11659 GCACCCCTTGGTATTTTAGCACC 11681 || || | |||||||| || || Sbjct 6541 GCTCCTTTCGGTATTTTGGCTCC 6519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634937187036760