Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11047 129 7e-25 >seq11047 Length=52604 Score = 129 bits (142), Expect = 7e-25 Identities = 399/599 (67%), Gaps = 24/599 (4%) Strand=Plus/Minus Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGAGGCTGTTGGCAT 106005 ||||| |||||||||||||| ||| ||||||| ||||| || |||||||||||||| Sbjct 24091 GTGTATGGTTCAAAGCATTCGTTAA-ACCCAAGGATTTGACTCGTCGAGGCTGTTGGCAT 24033 Query 106006 TGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTC-CTTGAGAAC-A 106063 ||||| | || || || |||| || | ||||| | ||| ||| | | | Sbjct 24032 AGGTGCAAGTAAGAGGGAATTCCGAATCCCTGTGGTCTTGA--CTTTCTCTTTCAAGCTA 23975 Query 106064 TCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTT 106121 ||||| || || | | || ||||| | ||||||| ||||||||||| | |||| Sbjct 23974 TCCCACTCCCATAAATTCGAA-GGCTTCACGT-CCCACATGTCAAATTGAAGGATACCTT 23917 Query 106122 GGGACGTGGGAGAACCCTCAAATGTCTCATA-GGAACCTTGGGCTTCAGCCAATTCACAG 106180 | | ||| || || ||| |||||||| ||| ||| || ||||| ||| | Sbjct 23916 GACTGGCGGGTGAGCCGGGAAAAGTCTCATATGGACCCTCTTTGATC-GCCAACTCATTG 23858 Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240 ||||| || || || ||||||| ||||||||||| ||| ||||| ||||| || Sbjct 23857 GAGGCCTCTAGCGAAGCATGATACAGAGTTTCAAAGATCTGAGTATTCAGTTCCTTCGCA 23798 Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAAAAT-AAATACATCCGCGAGACCTTGAACACC 106299 | |||| || |||| ||||| | | | || | || || || ||||| || || Sbjct 23797 GCTGCTGACTCGAATG-GTAGCTTGAGGATTTGGAAAGCGTCAGCAAGTCCTTGTACTCC 23739 Query 106300 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGGGATAAAAA 106357 | |||||| || | |||| ||| || ||||| | ||| ||| | |||| || || Sbjct 23738 GATACCAATCGGACGATGTCTCATGTTCGACTTCCTCGC-CTCTGGGATCGGG-TAGTAA 23681 Query 106358 TTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTT 106417 || |||| || | ||| || ||||| | ||| || ||| |||| ||||||||||| Sbjct 23680 TTGATGTCGATAATTCGATTCAGATTGTAGGTGACTTCCTTGGTGACCTCATGAAGTTTG 23621 Query 106418 TCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAA 106477 | | || | ||| | || || ||| |||| | ||| || || |||||| Sbjct 23620 TGGAAGTCGTATTTGC------CATCGACGATATAAGTTGGTAAGGCAATCGAGGCCAAA 23567 Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGA 106536 || ||||| || || || | | ||| || | ||| || ||||| | |||||| Sbjct 23566 TTACAAACTGCGACTTCGTCAGGGGCGGAGTATTCGATAATCTCGGTACAGAGGTTGGA 23508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589799093288360