Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13338 141 2e-28 seq5107 141 2e-28 seq13340 132 1e-25 seq13339 132 1e-25 seq13337 132 1e-25 seq5108 93.3 9e-14 >seq13338 Length=675 Score = 141 bits (156), Expect = 2e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| |||||||| || ||||| |||||||| |||||||||| || |||||| Sbjct 531 ACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGGCCGTCTTCG 590 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || || |||||||| || |||||||| || ||||| ||||| ||||||||| Sbjct 591 AGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGAATACCTTCCTTGTCTTGA 650 Query 195052 ATTTTTTGCTTGACGTTCTCAAT 195074 || || ||| || |||||||| Sbjct 651 ATCTTGGCCTTCACATTCTCAAT 673 Score = 93.3 bits (102), Expect = 9e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||||||||| ||||| || || ||||| | || ||||| || ||||| || ||||| Sbjct 4 CCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCC 63 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || ||||||||| ||||| || || || || ||||| | || Sbjct 64 TTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTG 123 Query 195103 ACCGTCTTTCCTGT 195116 | ||||||||||| Sbjct 124 ATGGTCTTTCCTGT 137 >seq5107 Length=2524 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| || ||||| || ||||||||||| || ||||| || |||||||| | Sbjct 2189 GAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCA 2248 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || || ||||| || || || || | ||||| |||||||| ||||| ||||| Sbjct 2249 ACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTC 2308 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||||||||| || ||||||||| ||||||||||| || || ||||| | | | Sbjct 2309 CTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGAT 2368 Query 195102 AACCGTCTTTCCTGTCAA 195119 | ||| || || ||||| Sbjct 2369 GATCGTTTTGCCAGTCAA 2386 Score = 136 bits (150), Expect = 9e-27 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || ||||| |||||||| ||||| |||| || || || || || Sbjct 1909 GTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTG 1968 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| || ||||| || || |||||||| || || ||||| || || Sbjct 1969 CTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTT 2028 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| || || || ||||||||||| | ||||||||||| Sbjct 2029 GGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCAAGGGTGATGGTCTTTCCTGT 2088 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| || || || ||||| ||||| || || | || ||||| || || Sbjct 1332 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGTTGT 1391 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || ||||||||||||||||||||||| || |||||||| || || Sbjct 1392 TTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTA 1451 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| ||||| || || || || ||||| | || | ||||||||||| Sbjct 1452 GCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTCTTTCCTGT 1510 Score = 123 bits (136), Expect = 6e-23 Identities = 141/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | |||||| || || | | || ||||||||||||| |||| || | ||||||| Sbjct 741 AACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAG-GTACGACCATCTT 799 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 |||| ||||| || ||||| || || ||||| || || || || || || || ||||||| Sbjct 800 CGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTTGTCTT 859 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | ||||| ||||||||| || || ||||| | ||| ||||| ||||| | ||||| Sbjct 860 GGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAACTTCGAGGGTGATCGTCT 919 Query 195110 TTCCTGT 195116 | ||||| Sbjct 920 TGCCTGT 926 >seq13340 Length=1591 Score = 132 bits (146), Expect = 1e-25 Identities = 142/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || || || | ||||||||| || || || ||||| ||||| | || | || ||| Sbjct 238 AACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCT 297 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||||||| || ||||| | ||| ||||| || || ||||| ||||| |||||| Sbjct 298 TCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCT 357 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || || ||| ||||||||| ||||||||||| ||| || || ||||| || | ||| Sbjct 358 TGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTC 417 Query 195109 TTTCCTGT 195116 || || || Sbjct 418 TTGCCGGT 425 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| ||||| || |||||||| |||||||||||||| || ||||| || Sbjct 5 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 64 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || ||||| || || ||||||||| ||||| |||||||| || || || ||||| Sbjct 65 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 124 Query 195103 ACCGTCTTTCCTGTCAAA 195120 | || || || || ||| Sbjct 125 ATGGTTTTGCCAGTTAAA 142 >seq13339 Length=377 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||||| | ||| || ||||| || ||||||||||| || ||||| || ||||| || | Sbjct 35 GAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCG 94 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || || ||||| || || || || | ||||| |||||||| || || ||||| Sbjct 95 ACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTC 154 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||| || || ||||||||| ||||||||||| || || ||||| | ||| Sbjct 155 CTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGT 214 Query 195102 AACCGTCTTTCCTGTCAA 195119 | ||| || || ||||| Sbjct 215 GATCGTTTTGCCGGTCAA 232 >seq13337 Length=2187 Score = 132 bits (146), Expect = 1e-25 Identities = 142/184 (77%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| || ||||| || || || || ||||| |||| |||| || | ||||||||||| | Sbjct 1762 GTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTACGGCCATCTTCGAGTT 1820 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || ||||| || || ||||| || || || || || ||||| ||||||||||||| Sbjct 1821 GCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTGAATTT 1880 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | |||||||| || |||||||| ||| ||| ||||||||||| | |||||| | Sbjct 1881 TCGCTTTGACGTTATCGATGGTGTC---ACTGGATTCAACTTCAAGGGTGATCGTCTTGC 1937 Query 195113 CTGT 195116 |||| Sbjct 1938 CTGT 1941 Score = 132 bits (146), Expect = 1e-25 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||||||||||||||| ||||| || ||||||||||| ||||||| |||||||| Sbjct 2052 AACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCTTC 2111 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || || ||||| | || ||||| || ||||| || ||||| |||||||| Sbjct 2112 GAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTG 2171 Query 195051 AATTTTTTGCTTGACG 195066 || || ||||||| Sbjct 2172 GATCTTGGCCTTGACG 2187 >seq5108 Length=3302 Score = 93.3 bits (102), Expect = 9e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||| ||||| || |||||||| ||||||||||| || || ||||| || Sbjct 2 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCCGGCGGGATGCCCTCC 61 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 || ||||| || || ||||||||| ||||| ||| Sbjct 62 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTG 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109131350874113