Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq13338 95.1 1e-13 seq13337 93.3 3e-13 seq5107 93.3 3e-13 seq5648 89.7 4e-12 seq17959 87.8 1e-11 >seq13338 Length=675 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| || ||||||||||| || || ||| ||||||||||| ||||||| Sbjct 521 GAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCG 580 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| ||||| || || ||||| ||||| | || || || || ||||| ||||| Sbjct 581 GCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGAATACCTTC 640 Query 563376 TTTATCTTGAATTTT 563390 || |||||||| || Sbjct 641 CTTGTCTTGAATCTT 655 >seq13337 Length=2187 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || || ||||| || ||| ||||| || |||||||| || |||||| Sbjct 2043 GAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGG--ATGTTGTAATCGGCCAGAGTT 2100 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| ||||| ||||||||||| || | | || ||||| ||||| |||||| Sbjct 2101 CGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCT 2160 Query 563374 TCTTTATCTTGAATTTT 563390 || || ||||| || || Sbjct 2161 TCCTTGTCTTGGATCTT 2177 >seq5107 Length=2524 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||| ||||| || ||||||||||| ||| | ||||| || ||||| || || ||||| Sbjct 2189 GAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGG--ATGTTGTAGTCCGCAAGAGTG 2246 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | || || ||||| |||||||||||||| | | |||||| || || ||||| ||| Sbjct 2247 CAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCT 2306 Query 563374 TCTTTATCTTGAATTTT 563390 || || |||||||| || Sbjct 2307 TCCTTGTCTTGAATCTT 2323 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| || | ||||||||| || || ||| ||||||||||| || |||| Sbjct 1895 AGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGG 1954 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 || |||||||| || |||||||| ||||| | || ||||| || ||||| || || Sbjct 1955 CCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCC 2014 Query 563377 TTATCTTGAATTTT 563390 |||||||| || || Sbjct 2015 TTATCTTGGATCTT 2028 >seq5648 Length=23685 Score = 89.7 bits (98), Expect = 4e-12 Identities = 220/329 (67%), Gaps = 5/329 (2%) Strand=Plus/Minus Query 428255 GTAAAGATATATCTTGCGCTTGCGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGT 428314 || || ||||| ||||| || | ||||||||| || || | ||| || ||||| Sbjct 22958 GTGAAAATATACCTTGCAGAAGCTGCATCTTTACCACCAGAGGCACGAGTACCGAATTGG 22899 Query 428315 CCATTAGGCATCAATAAATTAATATTATTACTTCCCACATAATTTTGGGCCATATTAACA 428374 |||||||| | | |||||||||||||||||| ||| ||||||| || | || Sbjct 22898 CCATTAGGTGAGAGGACATTAATATTATTACTTCCGACAAAATTTTGAGCTAATCCGACT 22839 Query 428375 ATGGTACTAGTTAAGGATTG-TTCACCATGATGATATTTAGTTCTTTTTGAAACTGCACC 428433 || || || | || ||| ||| ||||||||||| | || |||| || Sbjct 22838 ATAGTTTGAG-TGAGACTTGCTTCTCCATGATGATAGGCTGAATGTTCTGAACAATATCC 22780 Query 428434 TTGTAATTCTGATACCTTTATTTCTTCTTTATAAATACCTTCTTCTACTGATCCATAAAA 428493 | ||||| || ||| || ||||| |||| || | ||| | || || || | || Sbjct 22779 TCCTAATTGTGCTACTTTAATTTCAGCTTT-CAATTTTCTTTTAAAAC--ATGCAAATAA 22723 Query 428494 TACTTTGCGTTGTGATGGTTTGAATCCATCCATAATATTAGGTATAGATCTTAAATTATC 428553 |||||| ||||| |||||||| ||||| | || || || ||||| | |||||| Sbjct 22722 TACTTTACGTTGACCGGGTTTGAAACCATCTACCATTGATGGAATCGATCTAATATTATC 22663 Query 428554 ATCCACTGAGAATGATATTAGTTCTTGAT 428582 | ||| |||||| | || | |||| || Sbjct 22662 AGCCATCGAGAATAAAATCAACTCTTTAT 22634 >seq17959 Length=8941 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 550399 TGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGC 550458 |||||| || || || || || || || || ||| | || || ||||| || |||||||| Sbjct 5091 TGCAGTTATCACCGTCCCCGCCTACTTCAACGACGCCCAGCGGCAAGCAACCAAAGATGC 5150 Query 550459 TGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACT 550518 ||| |||||| || |||| || ||| ||||||| || || || |||||||| || Sbjct 5151 TGGTGCAATTGCTAAGCTGGATGTCCTCCGTGTTATCAACGAGCCCACCGCTGCTGCTCT 5210 Query 550519 TGCATATGGACTTGAT 550534 |||||||| || ||| Sbjct 5211 GGCATATGGTCTGGAT 5226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027992978558110