Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq13338 116 2e-20 seq5107 109 4e-18 seq13337 105 4e-17 >seq13338 Length=675 Score = 116 bits (128), Expect = 2e-20 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| || |||||||| || || || || || |||||||| |||||| Sbjct 519 CGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTT 578 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||||| |||||||| |||||||| ||||| || ||||| || || ||||| ||| Sbjct 579 CGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGAATACCT 638 Query 480672 TCCTTGTCTTGAATCTT 480688 ||||||||||||||||| Sbjct 639 TCCTTGTCTTGAATCTT 655 Score = 96.9 bits (106), Expect = 2e-14 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| ||||||||||| ||||| || | ||| |||||||| ||||| ||||||||||| Sbjct 6 ATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTT 65 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||| ||||| ||||| ||||||||||| Sbjct 66 GTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATC 101 Score = 91.5 bits (100), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||| ||||| || | |||||| ||| ||||| || || || || || || || Sbjct 233 CGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTA 292 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||| | ||| || || ||||| || |||||||||||||| || || |||||| Sbjct 293 CGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCT 352 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| ||||| ||||| |||||| ||||| || || | | ||| || Sbjct 353 TCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGA 412 Query 480732 GTAATAGTTTTACCGGTGAG 480751 || || || ||||||||||| Sbjct 413 GTGATCGTCTTACCGGTGAG 432 >seq5107 Length=2524 Score = 109 bits (120), Expect = 4e-18 Identities = 124/163 (76%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || |||||||| || | |||||| || ||| |||| ||| || |||| || | || Sbjct 1027 CGGAGACGGAGAACCAAATGAAGGGTGGACTC-CTTTTGAATG-TTGTAATTGGCCAAAG 1084 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| ||| |||||||||||||||||||| || ||||| |||||||| || || |||| Sbjct 1085 TTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTC 1144 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||||||||||| ||||| ||||| |||||||| || Sbjct 1145 CTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTC 1187 Score = 105 bits (116), Expect = 4e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| || | ||||| ||| || || || || |||||||| || ||| Sbjct 1892 CGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTT 1951 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || ||||||||||| || ||||| |||||||| |||||||| || ||||| || Sbjct 1952 CGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCC 2011 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||| ||||| |||||| || || ||||| Sbjct 2012 TCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATC 2052 Score = 96.9 bits (106), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| || ||||| || |||||||| || ||| | ||| || || || || || ||| Sbjct 2186 ACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATG--TTGTAGTCCGCAAGA 2243 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | || || ||||||||||| |||||||| | |||||| || || || ||||| Sbjct 2244 GTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATA 2303 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG 480714 |||||||||||||||||||| ||||| ||||| || |||| Sbjct 2304 CCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAG 2349 Score = 95.1 bits (104), Expect = 8e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||||||||| ||||| ||||| || ||||||||||| || |||||||| || |||||| Sbjct 1380 TCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTG 1439 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 ||||| ||||| ||||| ||||||||||| Sbjct 1440 TCTTGGATCTTAGCCTTGACGTTGTCAATAGTATC 1474 Score = 86.0 bits (94), Expect = 4e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || ||||| || | |||||| ||| ||||| || || || || || || || | | Sbjct 1609 AGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGG 1668 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 || || ||||| || || ||||| || | |||||||||||| | || || |||||| Sbjct 1669 CCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCC 1728 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 |||||||| ||||| ||||||| ||||| || || | | ||| || || Sbjct 1729 TTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTG 1788 Query 480735 ATAGTTTTACCGGTGAG 480751 || || ||||||||||| Sbjct 1789 ATCGTCTTACCGGTGAG 1805 >seq13337 Length=2187 Score = 105 bits (116), Expect = 4e-17 Identities = 108/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || |||||||| || || ||||| || ||| ||| || || ||||| || |||| Sbjct 2041 CGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATG--TTGTAATCGGCCAGAG 2098 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| |||||| ||||||||||| ||||| || | ||| |||||||| ||||| |||| Sbjct 2099 TTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTC 2158 Query 480670 CTTCCTTGTCTTGAATCTT 480688 ||||||||||||| ||||| Sbjct 2159 CTTCCTTGTCTTGGATCTT 2177 Score = 100 bits (110), Expect = 2e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| || || ||||| |||||||| |||||||| || || |||||||| Sbjct 1810 ATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTT 1869 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||| || |||||| || || || ||| || | | ||||||||| || Sbjct 1870 GTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGAT 1929 Query 480737 AGTTTTACCGGTGAG 480751 || || || ||||| Sbjct 1930 CGTCTTGCCTGTGAG 1944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267122313741572