Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11047 131 2e-25 seq5648 84.2 3e-11 >seq11047 Length=52604 Score = 131 bits (144), Expect = 2e-25 Identities = 418/630 (66%), Gaps = 24/630 (4%) Strand=Plus/Plus Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 || || ||||| | ||||| ||||| || || || || || || ||| | || ||| Sbjct 23478 AATCAGAAGAACCTTGGAACCATCAAATCATCCAACCTCTGTACCGAGATTATCGAATAC 23537 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC 76075 | | || || || ||||| |||||||| || || ||| | |||| ||| || Sbjct 23538 TCCGCCCCTGACGAAGTCGCAGTTTGTAATTTGGCCTCGATTGCCTTACCAACTTATATC 23597 Query 76076 AATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACC 76135 || | ||| | || | | ||||||||||| |||| ||| || ||| Sbjct 23598 GTCGATG------GCAAATACGACTTCCACAAACTTCATGAGGTCACCAAGGAAGTCACC 23651 Query 76136 AAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGT 76193 | ||||| || ||| | || |||| |||| || |||| | ||| ||| | |||| Sbjct 23652 TACAATCTGAATCGAATTATCGACATCAATTACTA-CCCGATCCCAGAG-GCGAGGAAGT 23709 Query 76194 CTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTT-ATT 76252 | || ||| |||| | || |||||| | || || ||||| || || || | || | Sbjct 23710 CGAACATGAGACATCGTCCGATTGGTATCGGAGTACAAGGACTTGCTGACGCTTTCCAAA 23769 Query 76253 TTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAA 76312 | | ||||| |||| || |||| | || ||||| ||||| ||| ||||||||| Sbjct 23770 TCCTCAAGCTAC-CATTCGAGTCAGCAGCTGCGAAGGAACTGAATACTCAGATCTTTGAA 23828 Query 76313 ACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCC-TA 76371 || ||||||| || || || ||||| ||| ||||| || ||| ||| || Sbjct 23829 ACTCTGTATCATGCTTCGCTAGAGGCCTCCAATGAGTTGGC-GATCAAAGAGGGTCCATA 23887 Query 76372 TGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGG 76431 |||||| ||| || || ||||| ||||| | ||||| ||||| ||||||| | | Sbjct 23888 TGAGACTTTTCCCGGCTCACCCGCCAGTCAAGGTATCCTTCAATTTGACATGTGGG-ACG 23946 Query 76432 TGAAACCAAGCTCAACTA--CGACTGGGAT-GTTCTCAAG-GAACGCATCAAGGAGAAGG 76487 |||| || | | || || |||||| | | ||| ||| | ||||| | | Sbjct 23947 TGAAGCC-TTCGAATTTATGGGAGTGGGATAGCTTGAAAGAGAAAG--TCAAGACCACAG 24003 Query 76488 GTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT-CTTG 76546 | |||| || || || | ||||| |||||||||||||| || ||||| |||| Sbjct 24004 GGATTCGGAATTCCCTCTTACTTGCACCTATGCCAACAGCCTCGACGAGTCAAATCCTTG 24063 Query 76547 GGTAATAATGAATGCTTTGAACCATACACA 76576 ||| ||| ||||||||||||||||||||| Sbjct 24064 GGT-TTAACGAATGCTTTGAACCATACACA 24092 >seq5648 Length=23685 Score = 84.2 bits (92), Expect = 3e-11 Identities = 232/348 (67%), Gaps = 12/348 (3%) Strand=Plus/Plus Query 13517 AAGAAGACCGATGGTGCTCGCAAG--TCCAAAATTACCGGTATTCCCAAGTTGGATGACG 13574 ||||| |||||||| ||| || || | |||||| || || || || || || | Sbjct 21632 AAGAAAACCGATGGA--TCGAAACGATCAAGAATTACAGGAATAGTGAAATTAGAAGATG 21689 Query 13575 CGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACTCTCATTGTCACAGAGGGTGATT 13634 | || || || || || | || ||| | | ||||| | || | || ||||| |||| Sbjct 21690 CTAATAATGCTGGAACACGAAAAGCTGCAGATTGTACATTGATCTTAACCGAGGGGGATT 21749 Query 13635 CGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGT 13694 | || ||| || | || ||||| || | || || | ||||||||| | || || || | Sbjct 21750 CAGCCAAATCCTTAGCAGTTGCTGGATTATCGGTTATCGGTCGTGATAATTATGGCGTTT 21809 Query 13695 TCCCACTTCGCGGTAAATGTAAGAATGTTCGGGACGCTTCGGTGGCACAGCTCACATCAA 13754 |||| ||| | |||||| | || || || || ||| | || || || || | Sbjct 21810 TCCCGCTTAGGGGTAAACTTCTTAACGTCCGAGAAGCTAGTGGTGCTCAACTTCTCTCGA 21869 Query 13755 AC-CAGGAGTTCAACGATCTCAAGAAGATCCTTGGTCTTCAACAAGGAAAAGACTAC-CA 13812 | | | | |||||| || |||| | ||| | ||||||||||| || ||| | ||| | Sbjct 21870 ATGCTGAAATTCAAC-ATATCAAACAAATCATGGGTCTTCAACAGGGTAAAAAATACTCT 21928 Query 13813 AG--ATGTTTCTGAACTTCGCTATGGTCGTCTTATGATTATGACAGAT 13858 || | |||| ||||| |||||| || | ||||| ||||| ||| Sbjct 21929 AGTAGGGATTCT---CTTCGATATGGTAGTTTAATGATCATGACCGAT 21973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596385864020320