Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq13338 113 8e-20 seq13340 91.5 3e-13 seq5107 89.7 9e-13 seq13337 86.0 1e-11 >seq13338 Length=675 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| ||||| | ||||||||| ||||| |||||||| || Sbjct 6 ATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTT 65 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| || | || |||||||||||| ||||||||||| | ||| || Sbjct 66 GTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGAT 125 Query 193325 AGTTTTACCTGTTAG 193339 || || ||||| || Sbjct 126 GGTCTTTCCTGTGAG 140 >seq13340 Length=1591 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || | || |||||||| || | ||| || || || Sbjct 214 ATTTGCATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTG 273 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| || || | || || || || || || ||||| || |||| ||||||| Sbjct 274 TAGTCGGCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGA 333 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || || ||||| || ||||| || || | || | || ||| || |||||| Sbjct 334 TCAGGGGGAATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAA 393 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAG 193339 ||||| || || ||||| || || || || || || Sbjct 394 GACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAG 428 >seq5107 Length=2524 Score = 89.7 bits (98), Expect = 9e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||| | ||| | ||| || || || ||||||| | || | | Sbjct 1320 CGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCG 1379 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||||||| || | | ||||| || ||||| || || || || Sbjct 1380 TCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTG 1439 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || |||||||||||| ||||||||||| | ||| || Sbjct 1440 TCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATG 1499 Query 193326 GTTTTACCTGTTAG 193339 || || ||||| || Sbjct 1500 GTCTTTCCTGTGAG 1513 >seq13337 Length=2187 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||||| | || || ||||| || | || | ||| || || || Sbjct 2025 AATTTGCATTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTT 2084 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || |||| | |||| | ||| || | ||| ||||||||||| ||||| | |||||| Sbjct 2085 GTAATCGGCCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTG 2144 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGG 193278 ||| ||||| |||||||| || ||||| || |||| Sbjct 2145 ATCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGG 2179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899377317690480