Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq20 118 2e-21 >seq20 Length=7811 Score = 118 bits (130), Expect = 2e-21 Identities = 185/263 (70%), Gaps = 15/263 (6%) Strand=Plus/Minus Query 18005 ACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAATA 18064 ||||| || ||||||| ||| ||||||||| | ||| || | || |||||||| Sbjct 2967 ACATACTGGCACATCAAGTCGGCATTCATACCGATAAGTTTGCAGGGAAGAGCATCCGAG 2908 Query 18065 ATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGGC 18124 | ||| |||||||||||||| |||| ||| ||| | | | | || | | | Sbjct 2907 AGAAACTCTTTCTCTATCTCGACAG---CTTGAGCAATGAT----AGCTTGGACTGTATC 2855 Query 18125 AATTTATTAATTATGTGATTATAAT------ATAATAAACACGCAAAATCAGTGTGTAAA 18178 | || | | || | | ||| |||||| |||||||||||| |||||||| Sbjct 2854 --TGGATGAGGTCTGCGCTCTAAATGGGAGAATAATAGACACGCAAAATCGGTGTGTAAT 2797 Query 18179 CCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttt 18238 ||||||||||| || |||| |||||| ||||||| || ||||||| ||||| || Sbjct 2796 CCTTCATCTCTTGAGATTAGTTCGTTCGAGAACGTTAGGCCCGGCATTAATCCTCTCTTC 2737 Query 18239 tttAGCCAAAATATCGATGCGAA 18261 |||||||| || ||||||||||| Sbjct 2736 TTTAGCCAGAAAATCGATGCGAA 2714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731646592572400