Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq13338 114 3e-20 seq13340 111 3e-19 seq5107 111 3e-19 >seq13338 Length=675 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||| || | || ||||| | |||| |||||| || || || || Sbjct 224 ATTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCG 283 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || |||||||||||||| |||||||||| | |||||||| || Sbjct 284 GCAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGG 343 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || ||| ||| || ||| || | || |||||||| Sbjct 344 GGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCC 403 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| ||||| || || ||||| || Sbjct 404 ACTTCCAGAGTGATCGTCTTACCGGT 429 >seq13340 Length=1591 Score = 111 bits (122), Expect = 3e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| || | ||| ||||| | ||| || ||| || || || Sbjct 220 ATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCG 279 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || ||||| || |||||||||||||| |||| |||||||||||| Sbjct 280 GCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGG 339 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | || || || || Sbjct 340 GGAATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCG 399 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 || || ||||| ||||| || || || Sbjct 400 ACCTCAAGAGTGATGGTCTTGCCGGT 425 >seq5107 Length=2524 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||||| ||||| | || ||||| | || | ||| ||| || || || |||| Sbjct 1018 ATTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGA-ATGTTGTAATT 1076 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || ||||| |||| || | ||| || ||||||||||||| | ||||||||| || Sbjct 1077 GGCCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGG 1136 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| || ||||| || || || || || |||| || || ||||| Sbjct 1137 TGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTC 1196 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || || | ||| |||||||| |||||||| Sbjct 1197 GACCTCCAAAGTGATGGTTTTGCCAGTTAA 1226 Score = 95.1 bits (104), Expect = 2e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | |||| |||||| || || || || | | || || | || ||| Sbjct 1618 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCC 1677 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 | ||||||||| ||||||||||| | |||||||| | || || ||||| || ||||| Sbjct 1678 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGG 1737 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || || ||| |||||| || | || |||||||| ||||| ||||| || || ||| Sbjct 1738 ATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTA 1797 Query 192508 CCAGT 192512 || || Sbjct 1798 CCGGT 1802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984169212277650