Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5648 159 1e-33 seq9270 87.8 5e-12 >seq5648 Length=23685 Score = 159 bits (176), Expect = 1e-33 Identities = 271/390 (69%), Gaps = 2/390 (1%) Strand=Plus/Minus Query 59957 ATCGGATTATGGGACATAATATCTGTGCTAAAACCAGTACCAATACCCTTTGTTCCATTG 60016 |||||||||| | | ||||||| || | ||||| ||||| || | | |||||| Sbjct 23144 ATCGGATTATAGTTCGGTATATCTGAACTCCATCCAGTTCCAATCCCACTAGATCCATTC 23085 Query 60017 ATAAGAATCATCGGGATAATTGGGATATAATAAACTGGCTCAACACTATCACCATCATCT 60076 | || | |||||| | ||||||||||| | | ||||| | ||||||||| Sbjct 23084 ACTAGTACCATCGGTAAGATTGGGATATACCATTCCGGCTCGATTTGTGTACCATCATCC 23025 Query 60077 TTTAAGTATGTTAAAACCTTGTCGTCAATTTCGGGAAATATAGCCCGAGTAATCTTGGAT 60136 |||| || |||| || || || || | | || || || | | ||||||||| | Sbjct 23024 GTTAAATAGTTTAAGACGTTATCATCTGATGCTGGGAAAATCACTCTAGTAATCTTTTCT 22965 Query 60137 AATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAG-ACGGGTTCC 60195 | | |||||||||||||| | || ||||| || || ||||| | | | ||| || || Sbjct 22964 ACATTAGTGAAAATATACCTTGCAGAAGCTGCATCTTTACCACC-AGAGGCACGAGTACC 22906 Query 60196 AAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAG 60255 ||||| || || || || | |||||| || ||| || || ||||||||||| | Sbjct 22905 GAATTGGCCATTAGGTGAGAGGACATTAATATTATTACTTCCGACAAAATTTTGAGCTAA 22846 Query 60256 ACCAACAATAGCACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAAC 60315 || || |||| | | | ||| ||||| || |||||||| | |||||||||||| Sbjct 22845 TCCGACTATAGTTTGAGTGAGACTTGCTTCTCCATGATGATAGGCTGAATGTTCTGAACA 22786 Query 60316 ATATCCACTGAATTGTGCGACTTTAATTTC 60345 |||||| | |||||||| ||||||||||| Sbjct 22785 ATATCCTCCTAATTGTGCTACTTTAATTTC 22756 >seq9270 Length=9228 Score = 87.8 bits (96), Expect = 5e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||||| ||||| || || || | || | | ||||| | ||| | | || | Sbjct 6752 TTTACCAATCGCATCTATCTCATCTACAAATACAATGCACGGTGCATTCTTCTTGGCTGT 6693 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||||||| |||| ||| || |||| ||| | || ||| |||| ||||||||||| || Sbjct 6692 TGCAAATAAATCTCGTACTCGAGATGGTCCTACTCCGACAAACATCTCTACAAATTCTGA 6633 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | ||||| | ||||| |||| |||||| || ||| || | || || | || Sbjct 6632 TCCTGATACCGATAGGAATGGTACACCTGCTTCTCCCGCTGTAGCTTTGGCTAGTAAGGT 6573 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAAT-AGAACTCCCTTTGGTACTTTTGCCCC 289259 ||| || ||||| || || ||| ||| | | |||| || |||| ||| || || Sbjct 6572 CTTCCCCGTTCCTGGCGG-ACCTGAAATCATAGCTCCTTTCGGTATTTTGGCTCC 6519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471352966041343