Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9794 102 1e-15 seq19547 96.9 4e-14 >seq9794 Length=4462 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 || ||||| |||| || |||| |||||||| || || |||||||||| | |||| | | Sbjct 3509 GCTTCGGTTGCGATTCGCTCGAAGATGTCGTTAACGAAAGAGTTCATGATCAACATGGCC 3450 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 ||||||||||| || ||||||||| ||||| || || |||||||||||| Sbjct 3449 TTGTTGGAGATACCGGTGTCGGGGTGAACCTGTTTAAGGACCTTGTAGATG 3399 >seq19547 Length=13572 Score = 96.9 bits (106), Expect = 4e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 || |||||| |||| || |||| || ||||||||||| |||||||||| ||| | | Sbjct 12744 GCTTCGGTGGCGATTCGCTCGAAGATATCGTTGACAAATGAGTTCATGATAAGCATGGCC 12685 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||| || || |||||| || ||||| ||||| |||||||||||| Sbjct 12684 TTGTTGGAAATTCCAGTGTCGGGATGGACCTGTTTGAGGACCTTGTAGATG 12634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105117208275563