Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5107 114 1e-20 seq13338 111 1e-19 seq13337 109 5e-19 seq13339 100 3e-16 seq13340 89.7 5e-13 >seq5107 Length=2524 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || |||||||| || || || || ||||| ||| | | ||||| | || | || ||| Sbjct 1805 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAAA 1746 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||||||||| ||||| || || | |||||||||||||| ||||||||||| Sbjct 1745 GCCAAGATCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCGGT 1686 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| |||||||| | | | | | || || |||||||| || || || || || Sbjct 1685 AAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 1626 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| | ||| | | ||||| Sbjct 1625 CATTTGGTTCTCCGACTCCAAGGAGG 1600 Score = 104 bits (114), Expect = 2e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 24726 TAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAAC 24785 |||| || ||||| || || | || || ||| | | ||||| | || | || || Sbjct 1225 TAACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGG 1166 Query 24786 AAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGA 24845 |||||||||||||| |||||||| || || |||||||| ||| | |||||||| || | Sbjct 1165 CCAAGATCCAAGACAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAA 1106 Query 24846 AACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTAC 24905 | || || |||||| ||| || | |||| |||||||||||||| || || || | Sbjct 1105 AGCAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTC 1046 Query 24906 ACTTGGT 24912 | ||||| Sbjct 1045 ATTTGGT 1039 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || || || || || || || ||||| || || |||| || | || | || || Sbjct 2091 CTTACAGGAAAGACCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGACAATGTCAAG 2032 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||||||||| || || || || || || |||||||| ||| | ||||||||||| Sbjct 2031 GCCAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGC 1972 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || || || ||||| ||| | | | ||||| |||||||| ||||| || || || Sbjct 1971 AAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTT 1912 Query 24905 CACTTGGT 24912 ||||| || Sbjct 1911 CACTTAGT 1904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || ||||| || ||||||||| | ||||||||||| ||| Sbjct 1450 AAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGAAAA 1391 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || || | | | | | || || ||||| || ||||| || ||||| || Sbjct 1390 CAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTCCAT 1331 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| | || | || ||||| Sbjct 1330 TTGGTCCTCCGTCTCCGAGGAGG 1308 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AACGGTAAA 24783 || || || || || || || |||||||| ||| | | ||||| | || |||| || Sbjct 929 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAG 870 Query 24784 ACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGG 24843 | ||| ||||||||||| || || || || || ||||| |||||| | || || ||||| Sbjct 869 GCGAAA-ATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGG 811 Query 24844 GAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACT 24903 || || || || ||| | | | |||| ||||| || || || || |||| || || Sbjct 810 CAAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCAGGAGAAATCAACCCT 751 Query 24904 ACACTTGGT 24912 |||||||| Sbjct 750 TCACTTGGT 742 >seq13338 Length=675 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || |||||||| || || || || ||||| ||| | | ||||| | || | || ||| Sbjct 432 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 373 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||||||||| || |||||||| || || |||||||||||| | ||||||||||| Sbjct 372 GCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGT 313 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| |||| || | | | | | || || |||||||| || || || || || Sbjct 312 AAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 253 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| | ||| | || ||||| Sbjct 252 CATTTGGTTCTCCGACTTCGAGGAGG 227 Score = 86.0 bits (94), Expect = 6e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||| || Sbjct 77 AAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAG 18 Query 24848 CAGCTGGAGGAT 24859 || || || ||| Sbjct 17 CAACTCGAAGAT 6 >seq13337 Length=2187 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||| || Sbjct 2177 AAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAG 2118 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || || ||| ||| || | ||||| ||||| |||||||| || || || ||| Sbjct 2117 CAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTTCAC 2058 Query 24908 TTGGT 24912 |||| Sbjct 2057 CTGGT 2053 >seq13339 Length=377 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| ||||| || || | ||||| || || ||||||| | || | || || Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 170 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| ||||| || || || || || ||||||||||| |||||||| || Sbjct 169 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 110 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || |||||||| | | | | | || || ||||| ||||| || ||||| || || Sbjct 109 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 50 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 |||| | ||| | || || || Sbjct 49 CTGGTTCTCCGACTCCGTGGTGG 27 >seq13340 Length=1591 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || ||||| || || || || || || || || | ||||||| | || | || || Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAG 369 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 ||||||||||||||| ||||| || || || |||||||| || ||||||||||| || Sbjct 368 GCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGT 309 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || ||| |||| || | | | || | || || ||||| || ||||| || || | Sbjct 308 AAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTG 249 Query 24905 CACTTGGTGTTGCG 24918 || | ||||| || Sbjct 248 CATCTCGTGTTACG 235 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24726 TAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAAC 24785 |||| || ||||| || || || || || || || | ||||| | || | || || Sbjct 140 TAACTGGCAAAACCATCACCCTAGAGGTTGAGTCCTCGGACACGATTGACAACGTCAAGG 81 Query 24786 AAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGA 24845 ||||||||||| || || || || || || || ||||||||| | ||||||||||| | Sbjct 80 CCAAGATCCAAGATAAGGAGGGCATCCCGCCAGACCAACAACGTCTTATCTTTGCCGGTA 21 Query 24846 AACAGCTGGAGGAT 24859 |||||||||| ||| Sbjct 20 AACAGCTGGAAGAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449759037162920