Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9794 95.1 2e-13 seq19547 89.7 8e-12 seq11047 87.8 3e-11 >seq9794 Length=4462 Score = 95.1 bits (104), Expect = 2e-13 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || ||||| |||| || |||| |||||||| || || |||||||||||| |||| | Sbjct 3509 GCTTCGGTTGCGATTCGCTCGAAGATGTCGTTAACGAAAGAGTTCATGATCAACATGGCC 3450 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 ||||||||||| || ||||||||| ||||| || || |||||||| Sbjct 3449 TTGTTGGAGATACCGGTGTCGGGGTGAACCTGTTTAAGGACCTTGTA 3403 >seq19547 Length=13572 Score = 89.7 bits (98), Expect = 8e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || |||||| |||| || |||| || ||||||||||| ||||||||||| ||| | Sbjct 12744 GCTTCGGTGGCGATTCGCTCGAAGATATCGTTGACAAATGAGTTCATGATAAGCATGGCC 12685 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||||||| || || |||||| || ||||| ||||| |||||||| Sbjct 12684 TTGTTGGAAATTCCAGTGTCGGGATGGACCTGTTTGAGGACCTTGTA 12638 >seq11047 Length=52604 Score = 87.8 bits (96), Expect = 3e-11 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 2073565 TTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCCGCCACGTAG 2073624 |||||||| || ||||| || |||| |||||||| | || ||||| || | | || Sbjct 22866 TTAAAGACTCGAAGCATAGGTACAATCCCGTTGGAGTATCCATTGGTCCCAGAGATATAA 22807 Query 2073625 GCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATG 2073684 ||| | ||| | | ||||| | | ||||| ||||| || ||||||||| Sbjct 22806 CTGCCAGTGGCTCTGATATTGTGGATGTGGAGTCCGATCCCGCCCGCACTCTTGGAGATC 22747 Query 2073685 AGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGTCGGCCTTCATGTCCAAC 2073744 | || || |||||| || |||||||| || |||||||| || | || || | | | Sbjct 22746 ATGGCACAAGTTTTCAAGGTATCGTAGATTCCGTCGATCGAATCAGATTTGCTGGCAACC 22687 Query 2073745 AGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCGGCATTGAAGAGCGTGGG 2073797 | ||||| || ||| ||| ||| | | || ||||||||||| || || || Sbjct 22686 AAGAAGCAAGATGAGAGTTGTGGGTGAGGGGTCCCGGCATTGAAAAGGGTCGG 22634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913625437191521