Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5107 95.1 8e-15 seq13339 93.3 3e-14 >seq5107 Length=2524 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| || | ||| ||||||||| ||||| ||||| | ||| |||| | || Sbjct 1323 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1382 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| |||||||| ||||| || ||||| |||||| | || | ||||||||||| Sbjct 1383 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1442 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | || |||||| Sbjct 1443 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1502 Query 34946 TTTCCCGTGAGG 34957 ||||| |||||| Sbjct 1503 TTTCCTGTGAGG 1514 Score = 86.0 bits (94), Expect = 4e-12 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| | ||||| ||| ||||||||||||||| || || | ||| | || | || Sbjct 1901 AGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCC 1960 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| ||||| || || || || || | || | |||||||| || Sbjct 1961 TCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCT 2020 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || || |||||| |||| ||| || Sbjct 2021 TGGATCTTGGCCTTGAC--AT--TGTCGATGGTATCGGAGGACTCGACTTCAAGGGTGAT 2076 Query 34942 GGTCTTTCCCGTGAGG 34957 ||||||||| || ||| Sbjct 2077 GGTCTTTCCTGTAAGG 2092 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||| || || ||||| ||||||| || ||| | || Sbjct 2196 AGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCAACCGTCC 2255 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||||||||||||||| || |||| |||||||||||| | || | || |||||||| Sbjct 2256 TCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTC 2314 >seq13339 Length=377 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| ||| ||| || || ||||| ||||||| ||| |||| | || Sbjct 42 AGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCC 101 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||||||||||||||| || |||| |||||||||||| | || | || |||||||| Sbjct 102 TCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTC 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325594998421541