Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5107 114 1e-20 seq13338 93.3 3e-14 >seq5107 Length=2524 Score = 114 bits (126), Expect = 1e-20 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| |||||| || || |||||||| ||||| || ||||||| |||| | Sbjct 2193 CGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCAACCG 2252 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || ||||| || || ||| | ||||| | |||||| || || |||||||| || ||| Sbjct 2253 TCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTG 2312 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTC-AAGAGTTA 29749 ||||| ||| || | ||||| | || | |||||||| || ||||| |||| | | Sbjct 2313 TCTTG-AATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGA-TGA 2370 Query 29750 TAGTTTTGCCAGTTAA 29765 | ||||||||||| || Sbjct 2371 TCGTTTTGCCAGTCAA 2386 Score = 113 bits (124), Expect = 3e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||||||||| ||||| || ||||||||||| |||| || | || ||| Sbjct 1032 ACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCCAAAGTTCGACC 1091 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || |||||| | || | | || |||||||| || || || || || Sbjct 1092 ATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTT 1151 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||||| | || | |||||| || ||| || || | ||| || Sbjct 1152 GTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGAT 1211 Query 29751 AGTTTTGCCAGTTAA 29765 |||||||||||||| Sbjct 1212 GGTTTTGCCAGTTAA 1226 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||||||||| || || ||||| |||||||| || || |||| ||| || Sbjct 1612 CGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCG 1671 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||| || ||| | || || | ||| ||||| | || || || || ||| Sbjct 1672 TCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTG 1731 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||||| | || | ||||| || ||| ||||| ||||| || Sbjct 1732 TCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATC 1791 Query 29752 GTTTTGCCAGT 29762 || || || || Sbjct 1792 GTCTTACCGGT 1802 >seq13338 Length=675 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | || || ||||||||||| || || ||||| |||||||| || || || Sbjct 226 TCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGC 285 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| ||| || || | |||||| || ||| | || | | ||| ||||| || || Sbjct 286 AAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGG 345 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| | || |||||| | || | ||||| || ||| || Sbjct 346 GATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCAC 405 Query 29739 TTCAAGAGTTATAGTTTTGCCAGT 29762 ||| ||||| || || || || || Sbjct 406 TTCCAGAGTGATCGTCTTACCGGT 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385103523369099