Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq13339 109 4e-19 seq5107 100 2e-16 seq13337 89.7 3e-13 seq13338 86.0 4e-12 >seq13339 Length=377 Score = 109 bits (120), Expect = 4e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || || ||||||||| |||||||| || | || ||||| |||| ||| Sbjct 45 ACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTCC 104 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| |||||||||||||||||||| ||||| ||| | || | |||||| ||||| Sbjct 105 AGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 164 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| | | || | ||| | ||||||| || || || || | ||||||||||| Sbjct 165 ATCTTC-GCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTGATCGTTTT 223 Query 33720 ACCTGTTAA 33728 || || || Sbjct 224 GCCGGTCAA 232 >seq5107 Length=2524 Score = 100 bits (110), Expect = 2e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || || ||||||||| |||||||| || | || |||| |||| ||| Sbjct 2199 ACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCAACCGTCCTCC 2258 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| |||||||||||||||||||| ||||| ||| | || | |||||| ||||| | Sbjct 2259 AGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 2318 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || ||| | | || | ||| | |||||| || || || || | |||||||||| Sbjct 2319 ATCTTC-GCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATCGTTTT 2377 Query 33720 ACCTGTTAA 33728 || || || Sbjct 2378 GCCAGTCAA 2386 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || |||| | ||| | |||||||| || ||| ||| || || ||| Sbjct 1296 AAAATCTGCATTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATG 1355 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| |||| ||| ||||| |||| || | ||||||||||||||| || | ||| || Sbjct 1356 TTGTAGTCGGCGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGT 1415 Query 33631 TGATCTTGCGGCACACCTTCTTTGTC 33656 || ||| | || | || || ||||| Sbjct 1416 TGGTCTGGAGGAATGCCCTCCTTGTC 1441 >seq13337 Length=2187 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||| || |||||| ||| ||||| ||||||||||||| Sbjct 2035 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2094 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| ||||||||||| || |||||||| ||||| | || Sbjct 2095 AGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGG 2154 Query 33643 ACACCTTCTTTGTC 33656 | ||||| ||||| Sbjct 2155 ATTCCTTCCTTGTC 2168 >seq13338 Length=675 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || |||||| || |||||||| |||| || || || |||| ||| Sbjct 245 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGACCGTCTTCC 304 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 |||||||| |||||||| || | ||| || |||||| | || | ||||| || || Sbjct 305 AATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGG 364 Query 33661 ATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTA 33720 || || ||| | || | ||||| |||||||| || | |||||||| ||| Sbjct 365 ATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTA 424 Query 33721 CCTGT 33725 || || Sbjct 425 CCGGT 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328605294194880