Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq13338 114 3e-20 seq5107 100 7e-16 seq13337 98.7 2e-15 seq13340 95.1 3e-14 seq13339 86.0 1e-11 >seq13338 Length=675 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAA 206249 ||||| || || ||||||||| ||||||||||| || ||||| | || || ||| Sbjct 432 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 373 Query 206250 GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGG 206309 || || ||| ||||| || |||||||| || || ||| | || ||||| ||||| Sbjct 372 GCTAA-GATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGG 314 Query 206310 AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCT 206369 || || |||||||| || | || | ||||| |||||| | |||||||||||||| || Sbjct 313 TAAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCT 254 Query 206370 TCACCTTGTTTTGAGACTTCGA 206391 ||| | ||| | |||||||| Sbjct 253 TCATTTGGTTCTCCGACTTCGA 232 >seq5107 Length=2524 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206181 TTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA 206240 |||||| | | || || |||||||||| |||||||| || |||||||| | || Sbjct 2396 TTGCAACAGATTGACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGA 2337 Query 206241 ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 || ||| ||||||||||| || ||||| ||| || ||| ||| | | || Sbjct 2336 CAACGTCAAGGCGAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGAT 2277 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || ||||||||||| |||| || || | ||| | || || |||||| |||| ||||| Sbjct 2276 TTTTGCCGGAAAGCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGA 2217 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || ||||| || ||| | |||| || Sbjct 2216 GTCAACCCTTCATCTGGTTCTCCGACTCCG 2187 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| ||||||||||| || ||| || ||||| | || || ||| Sbjct 1223 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1164 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || |||||||| ||||| || | || ||||| || |||||| Sbjct 1163 AAGATCCAAGACAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1104 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || | || ||||| | ||||||||| |||||||| | || || ||||| || ||||| Sbjct 1103 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCA 1045 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 ||||||||||| || |||||||||||||| || || || || | || || ||| Sbjct 1513 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 1454 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||| ||||| || || || ||| || ||| ||| | || ||||| |||||| Sbjct 1453 GCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGA 1394 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 || || | ||||| || | || | ||||| |||||| ||||||| ||||| || || Sbjct 1393 AAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTC 1334 Query 206371 CA 206372 || Sbjct 1333 CA 1332 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/187 (72%), Gaps = 10/187 (5%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAA 206249 ||||| || || ||||||||| ||||||||||| || ||||| | || || ||| Sbjct 1805 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAAA 1746 Query 206250 GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGAC-GCTCAAAGACTT---ATCTTCG 206305 || || ||| ||||| || ||||| || || || | |||| || | ||||| | Sbjct 1745 GCCAA-GATCCAAGACAAGGAAGGCAT----CCCCACAGATCAACAACGTTTAATCTTTG 1691 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 |||| || || |||| || || | || | ||||| |||||| | ||||||||||||| Sbjct 1690 CCGGTAAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTA 1631 Query 206366 CTCTTCA 206372 | ||||| Sbjct 1630 CCCTTCA 1624 >seq13337 Length=2187 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/129 (78%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATCTTCGCCGGA 206310 ||||| ||||| || |||||||| ||||| |||| || || ||||| |||||| Sbjct 2177 AAGATCCAAGACAAGGAAGGAATCCCTCCGGA---TCAACAGCGTTTAATCTTTGCCGGA 2121 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 ||||| | |||||||| | ||| |||||||||||||| |||| || ||||| |||||| Sbjct 2120 AAGCAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTT 2061 Query 206371 CACCTTGTT 206379 ||||| ||| Sbjct 2060 CACCTGGTT 2052 >seq13340 Length=1591 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 || || || || || |||||| | || || || ||| ||||| | || || ||| Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAG 369 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 |||||| ||||| || ||||| ||| || || || || | ||||| || || Sbjct 368 GCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGT 309 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 |||||||||||||| || | || |||||||| |||||| ||||||| ||||| ||| | Sbjct 308 AAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTG 249 Query 206371 CACCTTGTTTTGAGACTTCG 206390 || || || || | ||||| Sbjct 248 CATCTCGTGTTACGTCTTCG 229 >seq13339 Length=377 Score = 86.0 bits (94), Expect = 1e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206181 TTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA 206240 |||||| | | || || ||||||||||| |||||||| || || ||||| | || Sbjct 242 TTGCAACAGATTGACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGA 183 Query 206241 ATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 || ||| ||||| ||||| || ||||| || || ||| ||| | | || Sbjct 182 CAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGAT 123 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || ||||||||||| |||| || || | || | || || |||||| |||| ||||| Sbjct 122 TTTTGCCGGAAAGCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGA 63 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| || ||||| || ||| | |||| || Sbjct 62 GTCGACCCTTCATCTGGTTCTCCGACTCCG 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181447714315519