Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq13340 109 5e-19 seq5107 100 3e-16 seq13339 95.1 1e-14 seq13337 82.4 7e-11 >seq13340 Length=1591 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||| | ||| || || |||||| || |||||||| |||||| Sbjct 223 CCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 282 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || |||| |||| ||||||||| ||||| ||||| ||||| || || | ||| Sbjct 283 AAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGA 342 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| ||||||| ||| | |||| | | |||||| || || || Sbjct 343 ATACCTTCCTTGTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCGAC 401 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 ||| | ||||| || || || || Sbjct 402 CTCAAGAGTGATGGTCTTGCCGGT 425 >seq5107 Length=2524 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | ||| ||| || ||||||||||| ||||| | ||| || |||| ||| Sbjct 1618 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCC 1677 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || || ||||| ||||| || || || || || || | || | || |||||||| | Sbjct 1678 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGG 1737 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| || | | | | | |||||| ||||||||| |||| |||||||| ||| Sbjct 1738 ATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTA 1797 Query 35708 CCCGT 35712 || || Sbjct 1798 CCGGT 1802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || |||||||||||||||||||| |||||| ||||| | || || Sbjct 1039 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCCAAAGTTCGACCATCCTCA 1098 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || ||||| || | ||||| || |||| || | | |||||||| | Sbjct 1099 AGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGG 1158 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | |||| | | ||||| ||||| ||||||| ||||| ||||| Sbjct 1159 ATCTTGGCCTTGA-CGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATGGTTTT 1217 Query 35707 ACCCGTCAA 35715 || || || Sbjct 1218 GCCAGTTAA 1226 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| |||||||||||||| || | |||||| |||| || || ||||| || ||||| Sbjct 1921 CTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAA 1980 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 || | ||||| || |||| |||| || |||||| || |||||| Sbjct 1981 GATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTT 2028 >seq13339 Length=377 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | |||| ||| | || ||| ||||| |||||||| || | Sbjct 25 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 84 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||| || |||| ||||| ||||| || ||||| ||||| || |||||||| | | Sbjct 85 CAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 144 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCG-TGTCGCTCGATTCC 35686 | | | |||||||| |||||| ||| | |||| || | ||||| || || Sbjct 145 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGAC-GTTGTCAATGGTGTCGGAGGACTCG 203 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAA 35715 || |||| ||||||||||| || ||||| Sbjct 204 ACTTCCAAGGTGATCGTTTTGCCGGTCAA 232 >seq13337 Length=2187 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||||||||||| ||||| | || || || ||||| || ||||| Sbjct 2070 CTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAA 2129 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 || || ||||| || |||| ||| | | |||||||| |||||| Sbjct 2130 GATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCTTGGATCTT 2177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450654761206120