Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5107 127 2e-24 seq13340 125 7e-24 seq13338 122 9e-23 seq13339 118 1e-21 seq13337 96.9 4e-15 >seq5107 Length=2524 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||| |||||| | || | || || || || || || ||||||||||||||| Sbjct 1598 TTCCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1657 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | ||| || || ||||| || ||||| || ||||| || ||||| | | Sbjct 1658 CAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1717 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || ||||| || || |||||| || | ||||| |||||||||| Sbjct 1718 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCA 1777 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || ||||| || || |||||||| Sbjct 1778 CTTCCAGAGTGATCGTCTTACCGGT 1802 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| ||| || | || | || || ||||| ||||| || |||||||||||| Sbjct 1306 TTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 1365 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | |||| || ||| || || ||||| || ||||| || | ||| || || || || | Sbjct 1366 CGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 1425 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||| || || ||||| || || ||||| ||| | || |||||||| || | Sbjct 1426 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAA 1485 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || | ||| ||||| || || || Sbjct 1486 CTTCCAAAGTGATGGTCTTTCCTGT 1510 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| |||| ||| || | || | || || ||||| ||||||||||||||||| | | Sbjct 1019 TTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGG 1078 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | | || || || || || || || || ||||| || | |||||| ||||| || | Sbjct 1079 CCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTG 1138 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| ||| | ||||| || ||||| | Sbjct 1139 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGA 1198 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | ||| |||||||| || ||||| Sbjct 1199 CCTCCAAAGTGATGGTTTTGCCAGTTAA 1226 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | |||||| | || || || || || || || ||||| ||||||||||| Sbjct 2179 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCG 2238 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| | ||| || || || || || |||||||||||||| ||||| || || | Sbjct 2239 CAAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 2298 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || |||||||| || ||||| ||| | ||||| || || || | Sbjct 2299 GAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGA 2358 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | | || ||||| || || || Sbjct 2359 CTTCCAAGATGATCGTTTTGCCAGTCAA 2386 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || || | || | ||| || || || ||||| ||||||||||| || || Sbjct 1886 CCACCTCGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCA 1945 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || || || ||||| ||||| || | |||||| ||||| || || Sbjct 1946 AGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGA 2005 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| ||| | || ||||| || || || Sbjct 2006 ATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACT 2065 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || ||||| || || || Sbjct 2066 TCAAGGGTGATGGTCTTTCCTGT 2088 >seq13340 Length=1591 Score = 125 bits (138), Expect = 7e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || |||||||| || | ||||| ||||| || |||||||||||| | | |||| | Sbjct 232 AGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGG 291 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| || || ||||| ||||| ||||| ||||| || || || ||||| Sbjct 292 CCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCC 351 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || ||||| || ||| ||||| ||| | |||||||| || || || || ||||| Sbjct 352 TTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTG 411 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 412 ATGGTCTTGCCGGT 425 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 134583 ATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCG 134642 |||||||| || || || || || || || || || ||||||||||| ||||| | Sbjct 685 ATCAAACGTTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGTTG 744 Query 134643 TCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || | ||||||||||| || || |||||||| |||||||||||||| Sbjct 745 TCGATGGTGTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGT 791 >seq13338 Length=675 Score = 122 bits (134), Expect = 9e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| ||||| | || | || || || || || || ||||||||||||||| Sbjct 225 TTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 284 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| ||| || ||| || | ||||| || ||||| || | ||| || ||||| || | Sbjct 285 CAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGG 344 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || |||||| || | ||||| |||||||||| Sbjct 345 GGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCA 404 Query 134665 CGTCGAGAGTAATGGTTTTACCGGT 134689 | || ||||| || || |||||||| Sbjct 405 CTTCCAGAGTGATCGTCTTACCGGT 429 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | || || || || ||||| ||||| ||||||||||| || || Sbjct 513 CCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCA 572 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| ||||| || ||||| ||||| || | ||||| || || || || Sbjct 573 AGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGA 632 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 || ||||| || |||||||| || Sbjct 633 ATACCTTCCTTGTCTTGAATCTT 655 >seq13339 Length=377 Score = 118 bits (130), Expect = 1e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | |||||| | || || || || || || || ||||| ||||||||||| Sbjct 25 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 84 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| |||| || ||| || || || || || |||||||||||||| ||||| || || | Sbjct 85 CAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 144 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || ||||| || || ||||| ||| | |||||||| || || | Sbjct 145 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 204 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAA 134692 | || | || || ||||| ||||| || Sbjct 205 CTTCCAAGGTGATCGTTTTGCCGGTCAA 232 >seq13337 Length=2187 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || ||||||||||| || |||||||||||| Sbjct 1739 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1798 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || ||||| || ||||| || ||||| | ||| |||||||| || || Sbjct 1799 AAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGG 1858 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||||||||| |||||| || | ||||| ||||| || Sbjct 1859 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACT 1918 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || || || || || || Sbjct 1919 TCAAGGGTGATCGTCTTGCCTGT 1941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505242743610280