Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11047 134 2e-26 seq5648 84.2 3e-11 >seq11047 Length=52604 Score = 134 bits (148), Expect = 2e-26 Identities = 401/600 (67%), Gaps = 24/600 (4%) Strand=Plus/Minus Query 110719 TGTGTATGGTTCAAAGCATTCATTATTACCCAAG-ATTTGTGCGGTGGAGGCTGTTGGCA 110777 ||||||||||||||||||||| ||| ||||||| ||||| || ||||||||||||| Sbjct 24092 TGTGTATGGTTCAAAGCATTCGTTAA-ACCCAAGGATTTGACTCGTCGAGGCTGTTGGCA 24034 Query 110778 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC-CTTGAGAAC- 110835 | ||||| | || || || |||| || | ||||| | ||| ||| | | Sbjct 24033 TAGGTGCAAGTAAGAGGGAATTCCGAATCCCTGTGGTCTTGA--CTTTCTCTTTCAAGCT 23976 Query 110836 ATCCCAGTCG--TAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 |||||| || || | | || ||||| | ||||||||||||| ||||| | ||| Sbjct 23975 ATCCCACTCCCATAAATTCGAA-GGCTTCACGT-CCCACATGTCAAATTGAAGGATACCT 23918 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATA-GGAACCTTGGGCTTCAGCCAATTCACA 110952 || ||||| || || ||| || ||||| ||| ||| || ||||| ||| Sbjct 23917 TGACTGGCGGGTGAGCCGGGAAAAGTCTCATATGGACCCTCTTTGATC-GCCAACTCATT 23859 Query 110953 GCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGC 111012 | ||||| || || || ||||||| ||||||||||| ||| ||||| ||||| || Sbjct 23858 GGAGGCCTCTAGCGAAGCATGATACAGAGTTTCAAAGATCTGAGTATTCAGTTCCTTCGC 23799 Query 111013 TTCATCTGAATCAAATGCGTAGCGGCACAAAAT-AAATACATCCGCGAGACCTTGAACAC 111071 | |||| || |||| ||||| | | | || | || || || ||||| || | Sbjct 23798 AGCTGCTGACTCGAATG-GTAGCTTGAGGATTTGGAAAGCGTCAGCAAGTCCTTGTACTC 23740 Query 111072 CCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGGGATAAAA 111129 | | |||||| || | |||| ||| || ||||| | ||| ||| | |||| || | Sbjct 23739 CGATACCAATCGGACGATGTCTCATGTTCGACTTCCTCGC-CTCTGGGATCGGG-TAGTA 23682 Query 111130 ATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTT 111189 ||| |||| || | ||| || ||||| | ||| || ||| |||| ||||||||||| Sbjct 23681 ATTGATGTCGATAATTCGATTCAGATTGTAGGTGACTTCCTTGGTGACCTCATGAAGTTT 23622 Query 111190 TTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAA 111249 | | || | ||| | || || ||| |||| | ||| || || ||||| Sbjct 23621 GTGGAAGTCGTATTTGC------CATCGACGATATAAGTTGGTAAGGCAATCGAGGCCAA 23568 Query 111250 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGA 111309 ||| ||||| || || || | | ||| || | ||| || ||||| | |||||| Sbjct 23567 ATTACAAACTGCGACTTCGTCAGGGGCGGAGTATTCGATAATCTCGGTACAGAGGTTGGA 23508 >seq5648 Length=23685 Score = 84.2 bits (92), Expect = 3e-11 Identities = 232/348 (67%), Gaps = 12/348 (3%) Strand=Plus/Minus Query 182549 ATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACAT--CTTG-GTAGTCTTT 182605 ||| ||||| ||||| | || |||||| ||||| |||| | || | ||| | ||| Sbjct 21973 ATCGGTCATGATCATTAAACTACCATATCGAAG---AGAATCCCTACTAGAGTATTTTTT 21917 Query 182606 TCCTTGTTGAAGACCAAGGATCTTCTTGAGATCATTGAACTCCTG-GTTTGATGTAAGCT 182664 || ||||||||||| | ||| | |||| || ||||| | | | || || ||| | Sbjct 21916 ACCCTGTTGAAGACCCATGATTTGTTTGATAT-GTTGAATTTCAGCATTCGAGAGAAGTT 21858 Query 182665 GTGCCACCGAAGCGTCCCGAACATTCTTACATTTACCGCGAAGTGGGAACACACCGTAGT 182724 | || | ||| || || || || | |||||| | ||| ||||| || || || | Sbjct 21857 GAGCACCACTAGCTTCTCGGACGTTAAGAAGTTTACCCCTAAGCGGGAAAACGCCATAAT 21798 Query 182725 GATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTCGCCGAATCACCCTCCG 182784 ||||||||| | || || | || ||||| || | || ||| || ||||| ||||| | Sbjct 21797 TATCACGACCGATAACCGATAATCCAGCAACTGCTAAGGATTTGGCTGAATCCCCCTCGG 21738 Query 182785 TGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCCTTGTTCGCGTCATCCAACT 182844 | | || | ||||| | | ||| || | || || || || || || || || || | Sbjct 21737 TTAAGATCAATGTACAATCTGCAGCTTTTCGTGTTCCAGCATTATTAGCATCTTCTAATT 21678 Query 182845 TGGGAATACCGGTAATTTTGGA--CTTGCGAGCACCATCGGTCTTCTT 182890 | || || |||||| | || || ||| |||||||| ||||| Sbjct 21677 TCACTATTCCTGTAATTCTTGATCGTTTCGA--TCCATCGGTTTTCTT 21632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627838573994400