Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5648 178 4e-39 seq13338 161 3e-34 seq5107 138 3e-27 seq13337 125 2e-23 seq13339 114 4e-20 seq3966 114 4e-20 seq13340 111 5e-19 seq4660 107 6e-18 seq13853 93.3 1e-13 >seq5648 Length=23685 Score = 178 bits (196), Expect = 4e-39 Identities = 267/374 (71%), Gaps = 4/374 (1%) Strand=Plus/Plus Query 67896 TGAAATTAAAGTTGCACAATTTAGTGGTTATGTTTCAGAACATTCAGGCTATCATCACGG 67955 |||||||||||| |||||||| | || ||| |||||||||||||| ||||||||| || Sbjct 22755 TGAAATTAAAGTAGCACAATTAGGAGGATATTGTTCAGAACATTCAGCCTATCATCATGG 22814 Query 67956 TGAAGCTAGTTTAAATTCATCAATTGTAGGTTTAGCTCAGAATTTTGTTGGATCAAATAA 68015 ||||| ||| | | | | | || || || |||||||| |||||||| ||| ||||| Sbjct 22815 AGAAGCAAGTCTCACTCAAACTATAGTCGGATTAGCTCAAAATTTTGTCGGAAGTAATAA 22874 Query 68016 TATTAATTTACTAGAACCAAAAGGTCAATTTGGAACTAGATTACT-TGGAGGAAAAGATG 68074 ||||||| | || ||| || || ||||| || ||| | | || ||| || ||||||| Sbjct 22875 TATTAATGTCCTCTCACCTAATGGCCAATTCGGTACTCG-TGCCTCTGGTGGTAAAGATG 22933 Query 68075 CTGCATCTGAAAGATATATATTTACACATCTAAATACTTTAACTAGACTTATCTTTAGAC 68134 | || |||| ||| ||||| || || || || | | | |||||| | || || | Sbjct 22934 CAGCTTCTGCAAGGTATATTTTCACTAATGTAGAAAAGATTACTAGAGTGATTTTCCCAG 22993 Query 68135 AAGAAGATGATAATATTCTTGAA-TATTTAGAAGATGATGGTGATAAAGTTGAGCCAATC 68193 | ||||||||| |||| || |||||| ||||||||| || | ||||| Sbjct 22994 CATCAGATGATAA-CGTCTTAAACTATTTAACGGATGATGGTACACAAATCGAGCCGGAA 23052 Query 68194 TATTATGTTCCTATTATTCCTATGATTTTAGTAAATGGTTCAAAAGGGATTGGCACTGGA 68253 | ||| | || || | || ||| | |||| ||||| || | |||||||| |||||| Sbjct 23053 TGGTATATCCCAATCTTACCGATGGTACTAGTGAATGGATCTAGTGGGATTGGAACTGGA 23112 Query 68254 TTTAGTACAGATAT 68267 | ||| ||||||| Sbjct 23113 TGGAGTTCAGATAT 23126 >seq13338 Length=675 Score = 161 bits (178), Expect = 3e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || | || ||||| | |||||| ||||||||||| ||||| || | Sbjct 219 TTTGCATTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGT 278 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || ||||| | |||||| || ||||||||||||||||| |||| Sbjct 279 AGTCGGCAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGAT 338 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || |||||||| ||||| || || |||||||| || |||||||||| || || | Sbjct 339 CTGGGGGGATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACG 398 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| || || | ||||| ||||| || Sbjct 399 ATTCCACTTCCAGAGTGATCGTCTTACCGGTGAG 432 Score = 125 bits (138), Expect = 2e-23 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || |||||||| || ||||| || ||||| || | Sbjct 505 TTTGCATACCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGT 564 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||||| | ||||| || ||||| ||||| || ||||||||||| || || || || | Sbjct 565 AATCAGCAAGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGT 624 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 | || ||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 625 CCGGGGGAATACCTTCCTTGTCTTGAATCTTGGCCTTCACATTCTCAAT 673 >seq5107 Length=2524 Score = 138 bits (152), Expect = 3e-27 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | ||||| | |||||| || ||||| |||||||| || |||| Sbjct 1017 CATTCCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATT 1076 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || ||||| ||||| |||||||| |||||||||||||||||||| || ||||| || Sbjct 1077 GGCCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGG 1136 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || |||||||| || || || || || || || || || ||||| | || |||| ||| Sbjct 1137 TGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTC 1196 Query 140687 AACTTC--AAGTG 140697 || || ||||| Sbjct 1197 GACCTCCAAAGTG 1209 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | |||||| ||||||||||| ||||| || || || | | || || || || Sbjct 1615 AGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCC 1674 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || |||||||| || |||||||||| |||||| ||||| | || || ||||| || || Sbjct 1675 TCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCT 1734 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||| ||||||||||||| || || | ||| ||||| || || | ||| Sbjct 1735 TGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTC 1794 Query 140706 TTTCCGGTTAG 140716 || ||||| || Sbjct 1795 TTACCGGTGAG 1805 Score = 122 bits (134), Expect = 3e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | || ||||| |||||||| || ||||||||||| || || | Sbjct 2173 TTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGT 2232 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || | || || || ||||| ||||| ||||| || | ||||||||| | Sbjct 2233 AGTCCGCAAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGT 2292 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| ||||| || || ||||| || || || || || ||||| | ||||| | Sbjct 2293 CTGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGG 2352 Query 140683 GTTCAACTTC 140692 || ||||| Sbjct 2353 ACTCGACTTC 2362 Score = 120 bits (132), Expect = 9e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || | ||| || || ||||| || || || || || || | | || || || ||| Sbjct 1323 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1382 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 |||||||||||||| |||||||| |||||||| || || |||||||| || || || || Sbjct 1383 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1442 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || ||||| || || || ||||| | ||| || | |||||||| | || | ||| Sbjct 1443 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1502 Query 140706 TTTCCGGTTAG 140716 ||||| || || Sbjct 1503 TTTCCTGTGAG 1513 Score = 118 bits (130), Expect = 3e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | ||||| | ||||| || || | | || ||||| ||||| || Sbjct 723 ACCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGA 782 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| ||||| || || || || || ||||||||||||||||| || Sbjct 783 CAAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGG 842 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || || || ||||| || || || ||||| || | ||| | |||||| Sbjct 843 GATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAAC 902 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||| || || | ||||| || || ||| Sbjct 903 TTCGAGGGTGATCGTCTTGCCTGTAAGT 930 >seq13337 Length=2187 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || || || || || || || || || || Sbjct 1738 ACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 1797 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| ||||| || || || || || ||||||||||||||||| || Sbjct 1798 CAAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGG 1857 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || || |||||||| ||||| || ||||| || | ||| | |||||| Sbjct 1858 GATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAAC 1917 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAG 140716 |||||| || | ||||| || || || Sbjct 1918 TTCAAGGGTGATCGTCTTGCCTGTGAG 1944 >seq13339 Length=377 Score = 114 bits (126), Expect = 4e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| |||||||| | || ||||| |||||||| || ||||||||||| || || | Sbjct 19 TTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGT 78 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || || ||||| ||||| ||||| || | ||||||||| | Sbjct 79 AGTCCGCAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGT 138 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || ||||| || || || || || || || || || ||||| | || || | Sbjct 139 CTGGGGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGG 198 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || ||||| | || | || || ||||| Sbjct 199 ACTCGACTTCCAAGGTGATCGTTTTGCCGGT 229 >seq3966 Length=13626 Score = 114 bits (126), Expect = 4e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | ||||| || || || || |||| ||| |||||||||||||| || || Sbjct 4172 GGTATTGATCTCGGTACCACCTACTCCTGCGTTGGTGTATGGCAAAATGATCGAGTTGAG 4231 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || ||||| || || ||||| || ||||||| || || |||||||| || ||||| | Sbjct 4232 ATCATTGCCAACGACCAAGGAAATCGAACAACTCCTTCCTACGTTGCTTTCACCGACTCA 4291 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 || ||| |||| |||||| | || || || |||| || || || | | || || Sbjct 4292 GAACGTCTGATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCTCACCACACCGTC 4351 Query 349385 TTTGATGCTAAGCGACTTATTGG 349407 || ||||| ||||| || || || Sbjct 4352 TTCGATGCCAAGCGTCTGATAGG 4374 >seq13340 Length=1591 Score = 111 bits (122), Expect = 5e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| | ||| ||||| || || || || | Sbjct 215 TTTGCATACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGT 274 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || || || ||||| | || || ||||||||||| | || || |||| Sbjct 275 AGTCGGCCAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGAT 334 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| ||||| || || || || || || || || || ||||| | || || | Sbjct 335 CAGGGGGAATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAG 394 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 || || ||||| || | ||||| ||||| || Sbjct 395 ACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAG 428 >seq4660 Length=19697 Score = 107 bits (118), Expect = 6e-18 Identities = 180/260 (69%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 349634 TTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTT 349693 || || || || |||||| || || || ||||| || | ||||| || | || || Sbjct 17192 TTCAACGACGCTCAGCGTCAAGCTACCAAGGATGCCGGTACGATTGCCGGACTTAACGTA 17251 Query 349694 CTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGT 349753 || |||| | || ||||| ||||| ||||| ||||| || || || |||| || || Sbjct 17252 CTCCGAATTGTCAACGAACCAACTGCCGCAGCGATTGCCTACGGACTGGATAGAACGAAG 17311 Query 349754 GACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTA 349813 | ||| | | || || | | ||| |||| ||||| ||||| ||||| |||||| Sbjct 17312 GG---AGAGCACCAAATCATTGTATACGATCTAGGAGGTGGAACTTTCGATGTCTCACTA 17368 Query 349814 CTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGT 349873 ||| | | || ||||| | ||||| || || || |||||||| || || | || Sbjct 17369 CTATCGATCGATGAGGGTGTCTTTGAGGTCTTGGCTACCGCTGGTGACACTCACTTGGGA 17428 Query 349874 GGAGAAGATTTTGATAATCG 349893 ||||||||||| ||||| || Sbjct 17429 GGAGAAGATTTCGATAACCG 17448 >seq13853 Length=11510 Score = 93.3 bits (102), Expect = 1e-13 Identities = 220/329 (67%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 378183 ATCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGT 378242 ||||||| | ||||| | |||||| | || || | || || || || ||||| || Sbjct 4121 ATCATATGTGACCATGACATCTTCAAGAGCCTTCAAGAGACGACGCTGGATGTAACCGGT 4180 Query 378243 TTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAA 378302 | || || |||||||||||||| ||||| | ||||| |||| || ||||| || Sbjct 4181 CTCGGCGGTCTTGACTGCAGTATCAATCAAACCCTCTCGACCTGCCATAGCGTGGAAAAA 4240 Query 378303 TAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGG 378362 || || || || | || | | ||||| | || | ||||| | | | || Sbjct 4241 GAACTCTTGTGGGGTCAAGCCTCGTAAGTATGAATTTTCGACGAATCCCCGAGATTCGGG 4300 Query 378363 CGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCG 378422 ||||| ||||| || || |||| || | || |||| || || || || ||||| || Sbjct 4301 CGAATAATCATCCTTAGTGAAATGGGGCAGAGTTCGATACTTGAAGCCGTAGGGAATACG 4360 Query 378423 TTTTCCATCAACATTCTGTTGACCAA---GTGCAGAAACCATTTGAGCAATATT--TAAA 378477 ||| || || ||| ||||||||||| ||| || ||| |||| || || | || Sbjct 4361 TTTCCCTTCCACAGACTGTTGACCAACGCATGCCGA---CATCTGAGAGATGTTGATGAA 4417 Query 378478 TCACTACCTTTAGACCCAGCATTAACCAT 378506 | | ||||||||| ||||| | ||||| Sbjct 4418 TGA--ACCTTTAGAACCAGCTGTGACCAT 4444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514776053600117