Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13340 147 2e-30 seq5107 143 3e-29 seq13337 141 1e-28 seq13339 134 2e-26 seq13338 132 5e-26 seq2185 89.7 6e-13 >seq13340 Length=1591 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||||||||| || ||||||||||| ||||| || | ||||| || | ||| Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAG 369 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || |||||||| || ||||| || || || ||||| | || ||||||||| Sbjct 368 GCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGT 309 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| | || || | || ||| | || ||||| || |||| ||||| |||||| | Sbjct 308 AAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTG 249 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || |||||||| ||||| Sbjct 248 CATCTCGTGTTACGTCTTCGTGGTGG 223 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||| || || || ||||| || |||||||| || | ||| | || | ||| Sbjct 794 CTTACCGGTAAAACCATCACTCTCGAAGTTGAGTCGTCCGACACCATCGACAACGTCAAG 735 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 ||||||||||| ||||||||||| || ||||||||||| || ||| Sbjct 734 GCTAAAATTCAAGACAAGGAGGGTATCCCTCCAGACCAACAACGT 690 Score = 82.4 bits (90), Expect = 9e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || ||||| || || || || ||||||||||| || | |||| || | ||||| Sbjct 138 ACTGGCAAAACCATCACCCTAGAGGTTGAGTCCTCGGACACGATTGACAACGTCAAGGCC 79 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || |||||||| || || |||||||| || ||||| || ||||| ||||| Sbjct 78 AAGATCCAAGATAAGGAGGGCATCCCGCCAGACCAACAACGTCTTATCTTTGCCGGTAAA 19 Query 27550 CAACTCGAGGATG 27562 || || || |||| Sbjct 18 CAGCTGGAAGATG 6 >seq5107 Length=2524 Score = 143 bits (158), Expect = 3e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || ||| | || |||||||| |||| |||| || | ||| Sbjct 1513 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 1454 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||||||||| |||||||||||||| || ||||| || ||||| || Sbjct 1453 GCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGA 1394 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 || ||||| || || | ||| ||||| || ||||| || |||| ||||| ||||| || Sbjct 1393 AAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTC 1334 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||| | ||| | ||||| || || ||| Sbjct 1333 CATTTGGTCCTCCGTCTCCGAGGAGGA 1307 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 ||||| |||||||| || || || || ||||| || |||| | || | || | ||| Sbjct 929 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAG 870 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || ||||| || ||||||||||| || || || || ||||| ||||| ||||| || || Sbjct 869 GCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGC 810 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||||||||| |||| ||||||| | | || || ||| |||| || |||| || ||| Sbjct 809 AAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCAGGAGAAATCAACCCTT 750 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || | ||||| || ||||| Sbjct 749 CACTTGGTTCTCCGTCTCCGTGGTGG 724 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTG-AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGC 27488 || ||||| || || | ||||| | || ||||| ||| | ||||| || | ||||| Sbjct 2383 ACTGGCAAAACGATCA-TCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGGC 2325 Query 27489 TAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAA 27548 || ||||| |||||||| || ||||| ||||||||||| ||| | |||||||| || || Sbjct 2324 GAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAA 2265 Query 27549 GCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 |||||| ||||| | | | || || || ||||| || ||||||| || || || ||||| Sbjct 2264 GCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTTCA 2205 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||| || | || || || |||||| Sbjct 2204 TCTGGTTCTCCGACTCCGTGGTGGA 2180 Score = 129 bits (142), Expect = 7e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || ||||| || || ||| | ||||| || ||| || | |||| || | ||||| Sbjct 1223 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1164 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || |||||||| ||||| || || || || ||||||||||| |||||||| ||| Sbjct 1163 AAGATCCAAGACAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1104 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||||| ||| || | || | || || | |||||||| ||||| |||||| Sbjct 1103 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCAT 1044 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 | || | ||||| || |||||| Sbjct 1043 TTGGTTCTCCGTCTCCGAGGTGGA 1020 >seq13337 Length=2187 Score = 141 bits (156), Expect = 1e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || ||||| ||||| || |||| | ||| | || | || Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1885 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || |||||||| |||||||| || || || || || ||||| ||||| ||||| || || Sbjct 1884 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1825 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||||||||| |||| |||||| | | ||||| || |||| ||||||||||| || Sbjct 1824 AAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTC 1765 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||| | ||||| || ||||| Sbjct 1764 CACTTGGTCCTCCGTCTCCGTGGTGG 1739 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || || |||||||| ||||| ||||| || || |||||| |||| ||||| Sbjct 2183 AAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCC 2124 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||||||||| |||| ||| || || || || || || |||||||||| |||||| Sbjct 2123 GGAAAGCAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACT 2064 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| || || | ||||| || |||||| Sbjct 2063 CTTCACCTGGTTCTCCGTCTCCGAGGTGGA 2034 >seq13339 Length=377 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 |||||||| || || || | || || ||||| || | ||||| || | ||||| Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 170 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || || |||||||| || || || ||||||||||| ||| | |||||||| || ||| Sbjct 169 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 110 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 ||||| ||||| | ||| ||||| || ||||| || ||||||| || || || |||||| Sbjct 109 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 50 Query 27610 CTAGTCTTGCGTCTTCGCGGTGGA 27633 || || | || || || |||||| Sbjct 49 CTGGTTCTCCGACTCCGTGGTGGA 26 >seq13338 Length=675 Score = 132 bits (146), Expect = 5e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| ||||||| || ||||| |||||||| || ||||| || ||||| ||||| Sbjct 673 ATTGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGACCAACAGCGC 614 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 || || |||||||| ||||||||||| || | || || || || || || || | || Sbjct 613 CTTATCTTTGCTGGCAAGCAACTCGAAGACGGCCGAACTCTTGCTGATTACAACATTCAG 554 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||||| |||||||||||| | ||||| || ||||| Sbjct 553 AAGGAGTCCACCCTTCATCTAGTCCTCCGTCTCCGAGGTGG 513 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || || ||||| || ||| | || |||||||| |||| |||| || | ||| Sbjct 140 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 81 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || || |||||||| ||||| ||||| || || |||||| |||| ||||| || Sbjct 80 GCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGA 21 Query 27547 AAGCAACTCGAGGATGATCG 27566 ||||||||||| |||| ||| Sbjct 20 AAGCAACTCGAAGATGGTCG 1 >seq2185 Length=9687 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 ||||||||||||||||| || | || ||| | || ||||| || |||||||||| ||| Sbjct 743 GCTGGTAAGCAACTCGAAGACGGCCGAACCTTGGCCGACTACAACATCCAAAAGGAGTCC 802 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| | |||||||||||||| ||||| Sbjct 803 ACCCTTCACTTGGTCTTGCGTCTTCGTGGTGG 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570134751525680