Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13338 122 5e-23 seq13337 118 7e-22 seq5107 114 8e-21 >seq13338 Length=675 Score = 122 bits (134), Expect = 5e-23 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | |||||||| || || ||| || |||||||| || || | | Sbjct 227 CCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 286 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||||||||||||||| |||| ||| ||||| || || || Sbjct 287 AGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGG 346 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGT-CTTCGCTCTCCA 34657 | ||| ||||| ||| |||| || | ||| ||| || ||| |||| | || | |||| Sbjct 347 ATTCCTTCCTTATCTTGGATC-TTAGCTTTGACGTTATCAATCGTGTCCGACGAT-TCCA 404 Query 34658 CTTCCACGGTTATCGTTTTACCGGT 34682 |||||| || ||||| |||||||| Sbjct 405 CTTCCAGAGTGATCGTCTTACCGGT 429 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | ||| || ||| |||||| |||||||| ||||| | | Sbjct 513 CCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCA 572 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| ||||||| ||||| || || ||||| || | |||||||||||||| || Sbjct 573 AGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGA 632 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | || ||||||||| ||||| Sbjct 633 ATACCTTCCTTGTCTTGAATCTT 655 >seq13337 Length=2187 Score = 118 bits (130), Expect = 7e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||| || |||||| ||||||||| ||||| ||||| | Sbjct 2035 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2094 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| ||||| || |||||||| |||||||||||||| ||||| || Sbjct 2095 AGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGG 2154 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| ||||||||| |||||| Sbjct 2155 ATTCCTTCCTTGTCTTGGATCTT 2177 >seq5107 Length=2524 Score = 114 bits (126), Expect = 8e-21 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | ||||||||||| ||| |||||| || ||||| || || | Sbjct 1308 CCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1367 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||||||||||||||| |||||||| || | ||| |||||||| || || Sbjct 1368 AGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1427 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 1428 ATGCCCTCCTTGTCTTGGATCTT 1450 Score = 111 bits (122), Expect = 1e-19 Identities = 140/187 (75%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || || ||| || |||||||| || || | ||| || || |||| || Sbjct 1618 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCC 1677 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 ||||||||||||||||| |||||||| ||||| || | || | || ||||||||| | Sbjct 1678 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGG 1737 Query 34618 ATCTTTTGTTTTAACGATA-AAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||| || | ||| || || ||| |||| | || | |||||||||| || ||||| | Sbjct 1738 ATC-TTGGCTTTGACATTATCAATCGTGTCCGACGAT-TCCACTTCCAGAGTGATCGTCT 1795 Query 34676 TACCGGT 34682 ||||||| Sbjct 1796 TACCGGT 1802 Score = 109 bits (120), Expect = 3e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | |||||||| || ||| ||||||||||||||| |||| | Sbjct 1021 CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCC 1080 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | || |||||||| || || ||||| |||| ||||||||| ||||| || Sbjct 1081 AAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGG 1140 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| ||||||||| |||||| Sbjct 1141 ATTCCTTCCTTGTCTTGGATCTT 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314635090536887