Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq13338 156 4e-33 seq5107 152 4e-32 seq13340 131 1e-25 seq13337 114 1e-20 >seq13338 Length=675 Score = 156 bits (172), Expect = 4e-33 Identities = 148/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||| ||| | || ||||| ||||||||| |||| ||| ||||||| | |||||| Sbjct 432 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 373 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || ||||| || ||||| || || || |||||||| ||| |||| | ||||| Sbjct 372 GCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGT 313 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 ||||||||||||||| || ||| || |||| ||||||||||| || ||||| ||| | Sbjct 312 AAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 253 Query 27189 CATTTGGTT 27197 ||||||||| Sbjct 252 CATTTGGTT 244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 ||||||| || || || ||||||||||| ||||| || || || || |||||||| Sbjct 673 ATTGAGAATGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGACCAACAGCGC 614 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 | || | || ||||| ||| | |||||| | || || | |||||||||||||| Sbjct 613 CTTATCTTTGCTGGCAAGCAACTCGAAGACGGCCGAACTCTTGCTGATTACAACATTCAG 554 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||| | ||| | || | ||| | || ||||| || Sbjct 553 AAGGAGTCCACCCTTCATCTAGTCCTCCGTCTCCGAGGTGGTAT 510 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || || ||| | || ||| | ||||| || ||||||| | ||||| | ||||| Sbjct 140 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 81 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || |||||||| ||||| || || || ||||||||||||||||| | ||||| Sbjct 80 GCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGA 21 Query 27129 AAACAATTGGAAGA 27142 || ||| | ||||| Sbjct 20 AAGCAACTCGAAGA 7 >seq5107 Length=2524 Score = 152 bits (168), Expect = 4e-32 Identities = 147/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||| ||| | || ||||| ||||||||| |||| ||| ||||||| | |||||| Sbjct 1805 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAAA 1746 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || |||||||| |||||||| || | |||||||| |||||||| | ||||| Sbjct 1745 GCCAAGATCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCGGT 1686 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 |||||| |||| ||| | ||| || |||| ||||||||||| || ||||| ||| | Sbjct 1685 AAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 1626 Query 27189 CATTTGGTT 27197 ||||||||| Sbjct 1625 CATTTGGTT 1617 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || ||||| | || ||| | || || ||| | || ||| | ||||| | ||||| Sbjct 1223 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1164 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| ||||| || ||||| |||||||||||| |||| | || || || Sbjct 1163 AAGATCCAAGACAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1104 Query 27132 CAATTGGAAGACAGTTCGACCGTTT-CCGATTACAACATTCAAAAGGAGTCGACCTTACA 27190 ||| | || || || ||| | || || |||||||||||||||||||||| ||| | || Sbjct 1103 CAACTTGAGGATGGT-CGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCA 1045 Query 27191 TTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| | ||| | || ||||| || Sbjct 1044 TTTGGTTCTCCGTCTCCGAGGTGGAAT 1018 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || || ||| | || || |||||||| || | ||||| | || || | ||||| Sbjct 2091 CTTACAGGAAAGACCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGACAATGTCAAG 2032 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || ||||| || || ||||| || || |||||||||||| | || | |||||| Sbjct 2031 GCCAAGATCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGC 1972 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | || ||| | ||| || | |||||||||||||| |||||||| ||| | Sbjct 1971 AAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTT 1912 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || | ||| | || ||||| || Sbjct 1911 CACTTAGTCCTCCGTCTTCGAGGTGGTAT 1883 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTG-AAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 |||| ||||| | || | ||||| |||| || | || ||| | ||||| | ||||| Sbjct 2385 TGACTGGCAAAACGATCA-TCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAG 2327 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || ||||||||||| ||||| || || || || || || ||||| || | ||||| Sbjct 2326 GCGAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGA 2267 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| |||| ||| ||| || || | || |||||||| ||||| ||||| ||| | Sbjct 2266 AAGCAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTT 2207 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| | || | || ||||| || Sbjct 2206 CATCTGGTTCTCCGACTCCGTGGTGGAAT 2178 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| | || || || ||||| ||| | ||| | || || | ||||| Sbjct 929 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAG 870 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 ||||| |||||||| || || || ||||| ||||| || ||| | || | ||||||| Sbjct 869 GCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGC 810 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | ||||| || ||| | ||||||||||| || || || | || ||| | Sbjct 809 AAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCAGGAGAAATCAACCCTT 750 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||| | ||| | || ||||| Sbjct 749 CACTTGGTTCTCCGTCTCCGTGGTGG 724 >seq13340 Length=1591 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27008 TCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAA 27067 ||| ||||||||| | || |||||||| || || | |||||| | ||||| | ||||| Sbjct 429 TCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAA 370 Query 27068 ACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGG 27127 ||| || |||||||| ||||| || || || ||||||||||| || || | || || Sbjct 369 GGCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGG 310 Query 27128 CAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTT 27187 || || ||||||||| | ||| | |||| |||||||| || |||||||| || || Sbjct 309 TAAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTT 250 Query 27188 ACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || || ||| | || ||||| || Sbjct 249 GCATCTCGTGTTACGTCTTCGTGGTGGTAT 220 >seq13337 Length=2187 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| | || || |||||||| ||| | ||| | || || | |||||| Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1885 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 |||||||||||||| ||||| || || || ||||| || ||| | || | ||||||| Sbjct 1884 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1825 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || ||| | ||||| | ||| | ||||| |||||||| || ||||| || ||| | Sbjct 1824 AAGCAACTCGAAGATGGCCGTACCTTGTCCGACTACAACATCCAGAAGGAATCCACCCTC 1765 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| | ||| | || ||||| Sbjct 1764 CACTTGGTCCTCCGTCTCCGTGGTGG 1739 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||| ||||| || || || ||||||||||||||||| | ||||| || Sbjct 2177 AAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAG 2118 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | ||||| || || | ||||||||||||| ||||||||||| || | || Sbjct 2117 CAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTTCAC 2058 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || ||||| || Sbjct 2057 CTGGTTCTCCGTCTCCGAGGTGGAAT 2032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434784450569280