Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5107 131 1e-25 seq13338 127 1e-24 seq13340 104 2e-17 seq13339 102 6e-17 seq13337 102 6e-17 >seq5107 Length=2524 Score = 131 bits (144), Expect = 1e-25 Identities = 156/209 (75%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 |||||| || || ||||||||||| ||||| || || ||||||| |||| ||| | || Sbjct 1806 CCTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAATGTCAA 1747 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | | || | | ||||| ||||| | || |||||||||| |||||||| ||||||| Sbjct 1746 AGCCAAGA-TCCAAGACAAGGAAGGCATCCCCACAGATCAACAACGTTTAATCTTTGCCG 1688 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 | ||||||||||| |||| || || | | ||| |||||||| || |||||||| || Sbjct 1687 GTAAACAACTGGAGGACGGCCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCC 1628 Query 23810 TACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 | ||||| ||| | | | | ||||||| Sbjct 1627 TTCATTTGGTTCTCCGACTCCAAGGAGGA 1599 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| |||||| | || || || || |||||||| |||| | | || Sbjct 1223 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1164 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || ||||| ||||| | || || |||||||||||| |||| ||||| || || Sbjct 1163 AAGATCCAAGACAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1104 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 ||||| || || | || ||||| | | |||||||||| ||||| |||||||| | ||| Sbjct 1103 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCAT 1044 Query 23815 TTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||| | | | ||||| ||| Sbjct 1043 TTGGTTCTCCGTCTCCGAGGTGGA 1020 Score = 102 bits (112), Expect = 6e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || |||||||||| | ||||| || ||| | ||||| |||| | | || Sbjct 2383 ACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGGCG 2324 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || ||| ||||| |||||| | || ||||| || || ||||| || |||||||| || Sbjct 2323 AAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 2264 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||| |||| ||||| | | || |||||||| ||||||||||| || | ||| Sbjct 2263 CAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTTCAT 2204 Query 23815 TTAGTT 23820 | ||| Sbjct 2203 CTGGTT 2198 Score = 84.2 bits (92), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAA 23689 ||| || ||||| || ||||| || ||||| || ||| | || || | || ||| | || Sbjct 2092 CCTTACAGGAAAGACCATCACCCTTGAAGTCGAGTCCTCCGATACCATCGACAATGTCAA 2033 Query 23690 AACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCG 23749 | || | | || || || || | || || |||||||||||| | || ||||||| Sbjct 2032 GGCCAAGA-TCCAAGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCG 1974 Query 23750 GCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACAT 23809 |||| ||||| || |||| || || | | ||||||||||| || || ||||| || Sbjct 1973 GCAAGCAACTTGAGGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCC 1914 Query 23810 TACATTTAGT 23819 | || ||||| Sbjct 1913 TTCACTTAGT 1904 >seq13338 Length=675 Score = 127 bits (140), Expect = 1e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690 |||||| || || ||||||||||| ||||| || || ||||||| |||| | | || Sbjct 433 CCTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAA 374 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 | || || || || ||||| | || ||||||||||| ||| |||| |||||||| Sbjct 373 AGCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGG 314 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 |||||| ||||||||| || || | | ||| |||||||| || |||||||| || | Sbjct 313 TAAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCT 254 Query 23811 ACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||| | | | ||||||||| Sbjct 253 TCATTTGGTTCTCCGACTTCGAGGAGGA 226 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || || || |||||||| | || ||||| ||||| ||||| ||| Sbjct 646 GACAAGGAAGGTATTCCCCCGGACCAACAGCGCCTTATCTTTGCTGGCAAGCAACTCGAA 587 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 |||| || ||| | | ||||||||||| || || |||||||| | ||| |||| Sbjct 586 GACGGCCGAACTCTTGCTGATTACAACATTCAGAAGGAGTCCACCCTTCATCTAGT 531 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23631 CCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAA 23690 |||||| ||||| || |||||| | |||||||| || | || ||| |||| | | || Sbjct 141 CCTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAA 82 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 || || ||||| ||||| | || || ||||||||||||||||| |||||||| Sbjct 81 GGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGG 22 Query 23751 CAAACAACTGGAAGA 23765 || ||||| ||||| Sbjct 21 AAAGCAACTCGAAGA 7 >seq13340 Length=1591 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAA 23691 || || || || || |||||||| || || || || | ||||| |||| | | || Sbjct 428 CTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAG 369 Query 23692 CAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGC 23751 ||| || ||||| |||||| | || || ||||||||||| || || ||||| || Sbjct 368 GCAAAGATCCAAGACAAGGAAGGTATTCCCCCTGATCAACAGCGATTGATCTTTGCTGGT 309 Query 23752 AAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTA 23811 || || ||||||||| ||||| || | ||| |||||||| || || |||||||| || Sbjct 308 AAGCAGTTGGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAGGAGTCCACTTTG 249 Query 23812 CATTTAGTTTTA 23823 ||| | || ||| Sbjct 248 CATCTCGTGTTA 237 >seq13339 Length=377 Score = 102 bits (112), Expect = 6e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||||||||| | ||||| || ||| | ||||| |||| | | || Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 170 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || || ||||| |||||| | || ||||| || || ||||| || |||||||| || Sbjct 169 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 110 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||| |||| ||||| | | || |||||||| ||||||||||| || | ||| Sbjct 109 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 50 Query 23815 TTAGTT 23820 | ||| Sbjct 49 CTGGTT 44 >seq13337 Length=2187 Score = 102 bits (112), Expect = 6e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| ||||| | || || ||||||||||||||||| |||||||| || ||||| ||| Sbjct 2168 GACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAGCAACTCGAA 2109 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || | || ||| | | |||||||||||| ||||| |||||||| Sbjct 2108 GATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCAC 2065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337908099836612