Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13340 136 9e-27 seq13337 136 9e-27 seq5107 131 4e-25 seq13339 123 6e-23 seq13338 123 6e-23 seq22600 109 1e-18 seq22044 86.0 1e-11 seq5108 84.2 5e-11 >seq13340 Length=1591 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | || || || | |||||| || || |||| ||||| |||||||| || Sbjct 228 ACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGT 287 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || ||||| | |||||| ||||| ||||| | ||| ||||| || || |||||||| Sbjct 288 GCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACC 347 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||||| ||| || || |||||||| || | || || || | Sbjct 348 TTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAG 407 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 408 AGTGATGGTCTTGCCGGT 425 Score = 105 bits (116), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| ||||| || || || |||||||| ||||||||||| ||||| || || ||| Sbjct 5 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 64 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || ||||||||||| ||| || || || ||||| |||| || || |||| ||| Sbjct 65 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 124 Query 225676 ATCGTCTTGCCCGTCAAA 225693 || || ||||| || ||| Sbjct 125 ATGGTTTTGCCAGTTAAA 142 >seq13337 Length=2187 Score = 136 bits (150), Expect = 9e-27 Identities = 145/189 (77%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| |||||||| || |||| ||||| |||| ||| || | |||||| Sbjct 1754 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGGCCATCT 1813 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || ||||| || || || || ||||||||||||||| Sbjct 1814 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCT 1873 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || || ||||||||||| || ||| || || | |||||||| Sbjct 1874 TGAAT-TTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGT 1932 Query 225681 CTTGCCCGT 225689 |||||| || Sbjct 1933 CTTGCCTGT 1941 Score = 123 bits (136), Expect = 6e-23 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || ||||||| ||||||||||||| ||||| |||||| Sbjct 2050 AGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCT 2109 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || || ||||| | || ||||| || || || || |||||||||||| Sbjct 2110 TCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 2169 Query 225622 TGGATCTT 225629 |||||||| Sbjct 2170 TGGATCTT 2177 >seq5107 Length=2524 Score = 131 bits (144), Expect = 4e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||| || ||||| | ||||||| ||||||||||| ||||| || || ||| Sbjct 1045 TGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCCAAAGTTCGACCATCCTCAAGTTGC 1104 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| || || ||||| || || || || |||||||||||||||||||| Sbjct 1105 TTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTGTCTTGGATCTTG 1164 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || || || ||||| || | ||| || || || ||||| || ||||| || Sbjct 1165 GCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATGGTTTTGCCAGTT 1224 Query 225691 AA 225692 || Sbjct 1225 AA 1226 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || || || |||||||||| ||||| || || | ||| Sbjct 2186 ACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGT 2245 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || || || || | ||||| ||||| || |||||||| Sbjct 2246 GCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACC 2305 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| ||||| ||| || || |||||||| |||| || || || || Sbjct 2306 TTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAA 2365 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 ||||||| ||||| ||||| Sbjct 2366 GATGATCGTTTTGCCAGTCAA 2386 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || |||| | |||| ||||||||||| ||| || | |||||| Sbjct 739 AGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGACAAGGTACGACCATCT 798 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || ||||| || || ||||| || || || || ||||| ||||||||| Sbjct 799 TCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGGATACCCTCCTTGTCT 858 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || ||||| ||||| | ||| || || | ||||||||| Sbjct 859 TGGATTTTCGCCTTGACGTTATCGATAGTGTCACTAGATTCAACTTCGAGGGTGATCGTC 918 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 919 TTGCCTGT 926 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||| || || || || || || | |||||||| || | ||| Sbjct 1892 CGAAGACGGAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTT 1951 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || || ||||| || || |||||||| || ||||| || || ||||| || Sbjct 1952 CGGCCGTCCTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCC 2011 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| ||| ||| |||||||| || |||| || || || | Sbjct 2012 TCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCAAGG 2071 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 2072 GTGATGGTCTTTCCTGT 2088 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||||| ||||| || || |||| ||||| ||||| | || | || ||| Sbjct 1323 AGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCT 1382 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || || ||||| || ||||||||||| || ||||| || ||||||||| Sbjct 1383 TCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1442 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || || || | || || || || ||||| ||| Sbjct 1443 TGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAAGTGATGGTC 1502 Query 225682 TTGCCCGT 225689 || || || Sbjct 1503 TTTCCTGT 1510 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || ||||| || | ||||| ||||| | || | || || || || || Sbjct 1624 TGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCCAGTTGT 1683 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | |||||||| || | || || |||||||||||||||||||| Sbjct 1684 TTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGGATCTTG 1743 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||| || || ||||| || | |||||| || | ||||||||||| || || Sbjct 1744 GCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTACCGGT 1802 >seq13339 Length=377 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| || || || || || || || |||||||||| ||||| || || | || Sbjct 32 ACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGT 91 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || || || || | ||||| ||||| || || ||||| Sbjct 92 GCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACC 151 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| || || |||||||| |||| || || || || Sbjct 152 TTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAA 211 Query 225672 CGTGATCGTCTTGCCCGTCAA 225692 |||||||| ||||| ||||| Sbjct 212 GGTGATCGTTTTGCCGGTCAA 232 >seq13338 Length=675 Score = 123 bits (136), Expect = 6e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || ||||| || || || | |||||||| || | ||||| || ||| Sbjct 528 AGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCGGCCGTCT 587 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| |||||||| || |||||||| || |||||||||||||||||| Sbjct 588 TCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGAATACCTTCCTTGTCT 647 Query 225622 TGGATCTTTTGCTTCACA 225639 || ||||| ||||||| Sbjct 648 TGAATCTTGGCCTTCACA 665 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | || || || || ||||| || | ||||| ||||| | || Sbjct 233 CGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTA 292 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| | || || || || ||||| || |||||||| || || || || ||| Sbjct 293 CGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCT 352 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||||||||| || || || || ||||| || | |||||| || | Sbjct 353 TCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGA 412 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||||||||| || || Sbjct 413 GTGATCGTCTTACCGGT 429 >seq22600 Length=898 Score = 109 bits (120), Expect = 1e-18 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| | Sbjct 325 ATACTTCTGGATGTCCAAAAAATCAGAATAAATGTTGATAAAGAATTGGATCTCCTCCTC 266 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| || ||||| || ||||| ||||||| ||||||||| Sbjct 265 CTGCAGGGTCAAAGAATGATGTATTTAAATTTCGATCAGTTAA 223 >seq22044 Length=210 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTAC 7560 ||||| |||| ||| ||| || ||| |||| ||| || | ||| |||| | || Sbjct 1 ATAAGAATAGAGTTATCTGGACCTGGTGTTCAA-TATATAGCAG--ATAACCAATTATAT 57 Query 7561 AACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATG 7620 || ||| || || || || || | | ||||||||||| | |||||||| | | Sbjct 58 AATAGTATAATAACTGCACACGCAATATTAATGATTTTCTTCATGGTTATGCCAGCACTA 117 Query 7621 ATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTT 7680 ||||| || || || |||| || | |||||| | | |||| || ||||||||||| Sbjct 118 ATAGGAGGGTTTGGTAATTTCTTATTACCTTTATTAGTAGGTGGGCCGGATATGGCTTTC 177 Query 7681 CCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 || || | || ||||||||||| |||||| || Sbjct 178 CCTAGATTAAATAATATAAGTTTCTGATTATTA 210 >seq5108 Length=3302 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||||||| ||||| || || || |||||||| ||||||||||| ||||| || || ||| Sbjct 2 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCCGGCGGGATGCCCTCC 61 Query 225616 TTGTCTTGGATCTT 225629 || ||||||||||| Sbjct 62 TTATCTTGGATCTT 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192154733179466