Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq13337 111 4e-19 seq5107 102 2e-16 seq13338 100 7e-16 seq13339 98.7 2e-15 seq13340 89.7 1e-12 >seq13337 Length=2187 Score = 111 bits (122), Expect = 4e-19 Identities = 108/137 (79%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || |||||||| ||||| |||||||||||||||||||| | ||||| Sbjct 2043 GAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCG 2102 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| || ||||| ||||| ||||| | | ||| || |||| | ||||||| Sbjct 2103 ACCATCTTCGAGTTGCTTT--CCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCT 2160 Query 152004 TCCTTTTCTTGAATTTT 152020 ||||| ||||| || || Sbjct 2161 TCCTTGTCTTGGATCTT 2177 Score = 98.7 bits (108), Expect = 2e-15 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || || || || ||||||||||| |||| || || | Sbjct 1747 GAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACG 1806 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || |||||||| || || | ||||| || | | ||| ||||| Sbjct 1807 GCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTC 1866 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGA 152063 ||| ||||||||||| |||||| | || | | ||| ||| | || |||||||| Sbjct 1867 CTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGA--TTCAACTTCAAGG 1924 Query 152064 GTAATAGTTTTGCCCGTGAG 152083 || || || ||||| ||||| Sbjct 1925 GTGATCGTCTTGCCTGTGAG 1944 >seq5107 Length=2524 Score = 102 bits (112), Expect = 2e-16 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | |||||| || ||||| ||||| |||||||||| ||| ||||||| Sbjct 1029 GAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCCAAAGTTCG 1088 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || || ||||| || | ||| || |||| | ||||||| Sbjct 1089 ACCATCCTCAAGTTGCTTT--CCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCT 1146 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| | || | |||| || || || || | | Sbjct 1147 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAA 1206 Query 152064 GTAATAGTTTTGCCCGT 152080 || || |||||||| || Sbjct 1207 GTGATGGTTTTGCCAGT 1223 Score = 102 bits (112), Expect = 2e-16 Identities = 144/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || |||||||| || |||||||||||||||||||| || || | ||| | Sbjct 2189 GAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCA 2248 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||| || || | | |||||||| | | || ||| Sbjct 2249 ACCGTCCTCCAGTTGCTTT--CCGGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCT 2306 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTT-CAAG 152062 ||||| |||||||| || ||||| | || | | |||| || ||| |||| |||| Sbjct 2307 TCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAG 2366 Query 152063 AGTAATAGTTTTGCCCGT 152080 | | || |||||||| || Sbjct 2367 A-TGATCGTTTTGCCAGT 2383 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || | |||||| ||||||||||| || |||||||| ||||| | || | Sbjct 1608 GAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACG 1667 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || ||| ||||| ||||| | | || || || | | ||| ||||| Sbjct 1668 GCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTC 1727 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || ||||||| | || | |||| || || ||||| ||||| Sbjct 1728 CTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACTTCCAGAGT 1787 Query 152066 AATAGTTTTGCCCGTGAG 152083 || || || || ||||| Sbjct 1788 GATCGTCTTACCGGTGAG 1805 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| |||||||| || || ||||||||||| || | |||| || || Sbjct 1900 GAGGACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTC 1959 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| |||||||| | ||| || |||| | || || ||||| || Sbjct 1960 CTCAAGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATC 2019 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||| || || |||||| | || | | | || || ||| |||||||| || || || Sbjct 2020 TTGGATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCAAGGGTGATGGT 2079 Query 152072 TTTGCCCGTGAG 152083 || || || || Sbjct 2080 CTTTCCTGTAAG 2091 >seq13338 Length=675 Score = 100 bits (110), Expect = 7e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| |||||||| || ||||| || || ||||||||||| || | ||||| Sbjct 521 GAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTTCG 580 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || || || |||||||| | ||| ||||||| | || ||||| Sbjct 581 GCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGGAATACCTTC 640 Query 152006 CTTTTCTTGAATTTT 152020 ||| |||||||| || Sbjct 641 CTTGTCTTGAATCTT 655 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || | |||||| ||||||||||| || |||||||| ||||| | || | Sbjct 236 AGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGA 295 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| | ||| ||||| ||||| || | || || || | | |||||||||| Sbjct 296 CCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCC 355 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || |||||| | || | |||| || || ||||| ||||| Sbjct 356 TTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACTTCCAGAGTG 415 Query 152067 ATAGTTTTGCCCGTGAG 152083 || || || || ||||| Sbjct 416 ATCGTCTTACCGGTGAG 432 >seq13339 Length=377 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| ||| || |||||||| || |||||||||||||||||||| || || | || | Sbjct 35 GAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCG 94 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||| || || | | |||||||| | | ||| ||| Sbjct 95 ACCGTCCTCCAGTTGCTTT--CCGGCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCT 152 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || || ||||| | || | | |||| || ||| ||||| | Sbjct 153 TCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAG 212 Query 152064 GTAATAGTTTTGCCCGT 152080 || || |||||||| || Sbjct 213 GTGATCGTTTTGCCGGT 229 >seq13340 Length=1591 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || ||||| | ||| ||||| || ||||||||||| ||||| || || | || ||||| Sbjct 241 ACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCC 300 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | || || || ||||| | | ||| || || | | || |||||||| ||||| Sbjct 301 AACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGG 360 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| ||||| | || | | |||| ||| ||| || |||||||| || || ||| Sbjct 361 ATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTG 420 Query 152076 CCCGTGAGA 152084 || || ||| Sbjct 421 CCGGTAAGA 429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153456553556769