Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq13339 178 3e-39 seq5107 176 9e-39 seq13340 161 2e-34 seq13338 159 7e-34 seq13337 149 1e-30 seq5108 89.7 1e-12 >seq13339 Length=377 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||||||| | || |||||||||||||||||||| ||| Sbjct 27 CCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCGCA 86 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| ||||| || |||||||| ||||||||||| ||||| || Sbjct 87 AGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGG 146 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||||||||| || || ||| | || || ||||| || | |||||| Sbjct 147 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 206 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | |||||||| || || ||||| Sbjct 207 TCCAAGGTGATCGTTTTGCCGGTCAA 232 >seq5107 Length=2524 Score = 176 bits (194), Expect = 9e-39 Identities = 139/167 (83%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || ||||||||||| ||||| || ||||| ||||| |||||||| ||||||||| Sbjct 1636 TCTTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAG 1695 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || ||||||||||| || || || || ||||||||||||||||| ||||| || || Sbjct 1696 ATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTA 1755 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || |||||||| | ||| ||||| ||||||||||||||||| || Sbjct 1756 TCAATCGTGTCCGACGATTCCACTTCCAGAGTGATCGTCTTACCGGT 1802 Score = 168 bits (186), Expect = 1e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||||||| | || |||||||||||||||||||| ||| Sbjct 2181 CCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGCA 2240 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||| || ||||| ||||| || |||||||| ||||||||||| ||||| ||| Sbjct 2241 AGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGGA 2300 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||| ||||| || || ||| | || || ||||| || | |||||| Sbjct 2301 ATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGACT 2360 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | ||||||| || || ||||| Sbjct 2361 TCCAAGATGATCGTTTTGCCAGTCAA 2386 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | ||| || || |||||||||||||| || Sbjct 1308 CCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1367 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || || || |||||||| ||||||||||| | |||||||||||| ||| Sbjct 1368 AGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGA 1427 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| || || ||| | || ||||| || || | || ||| Sbjct 1428 ATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAACT 1487 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || | |||||| ||||| || || Sbjct 1488 TCCAAAGTGATGGTCTTTCCTGT 1510 Score = 147 bits (162), Expect = 5e-30 Identities = 170/223 (76%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 282863 AAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGT-GCTTTCTTTTTGGATGT 282921 ||| | || ||||||||| || || || |||| || | || | ||||| | |||| | Sbjct 714 AAATCATGCACCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCT-GGATAT 772 Query 282922 TGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGT 282980 |||| || | |||| || || ||||| || ||||| || ||||| || || | |||||| Sbjct 773 TGTAATCGGACAAG-GTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGC 831 Query 282981 TGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCC 283040 || ||| || |||||||||||||||||||| || || || ||| ||||||||||||| Sbjct 832 TGATCAGGTGGGATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCGATAGTGTCA 891 Query 283041 GAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || ||| |||||||| ||||||||||| || || |||||| Sbjct 892 CTAGATTCAACTTCGAGGGTGATCGTCTTGCCTGT--AAGTCT 932 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || |||||||| |||||||| || ||||| ||||| ||||| || ||||||||| Sbjct 1922 TCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTGCTTGCCGGCAAAG 1981 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| ||||| || ||||| |||||||| ||||||||||| || || || | Sbjct 1982 ATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTG 2041 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 ||||| || || || | |||||||| || ||||| ||||| || || Sbjct 2042 TCGATGGTATCGGAGGACTCGACTTCAAGGGTGATGGTCTTTCCTGT 2088 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || |||| ||| | ||| || ||||| |||||||| | || Sbjct 1021 CCACCTCGGAGACGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATTGGCC 1080 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| ||||| || || |||||||| | ||| ||||| || || Sbjct 1081 AAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGG 1140 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| || || ||| | || ||||||||||| | |||||| Sbjct 1141 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACC 1200 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAA 283078 || | |||||| || || || || || Sbjct 1201 TCCAAAGTGATGGTTTTGCCAGTTAA 1226 >seq13340 Length=1591 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || | || ||||| || ||| || || |||||||||||||| || Sbjct 222 ACCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGC 281 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||| || || | || || || ||||||||||| || ||||| ||| || Sbjct 282 CAAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGG 341 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| |||||||||||||||||||| || ||| | || || ||||| |||| ||||| Sbjct 342 AATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGAC 401 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||| ||||| || || Sbjct 402 CTCAAGAGTGATGGTCTTGCCGGT 425 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 |||||||| || || ||||| ||||||||||| | |||||||||||| ||| || ||| Sbjct 2 CGGCCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCC 61 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 ||||| ||||||||||| || || ||| | || || |||||||| | || || || || Sbjct 62 TCCTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGG 121 Query 283059 GTGATCGTCTTACCCGTCAAA 283079 ||||| || || || || ||| Sbjct 122 GTGATGGTTTTGCCAGTTAAA 142 Score = 102 bits (112), Expect = 2e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 ||||||||||||||||||| || ||||||||||||||||| || || || || ||| Sbjct 683 AGATCAAACGTTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGT 742 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | ||||| ||||| || | || |||||||||||||| || ||||| || Sbjct 743 TGTCGATGGTGTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGT 791 >seq13338 Length=675 Score = 159 bits (176), Expect = 7e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| ||| | || ||||| || ||||||||||| ||| Sbjct 227 CCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 286 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || | |||||| ||||||||||| | ||||||||| || || Sbjct 287 AGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGG 346 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||||||||| ||||| ||| |||| || |||||||| | ||| ||| Sbjct 347 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACT 406 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || ||||||||||||||||| || Sbjct 407 TCCAGAGTGATCGTCTTACCGGT 429 Score = 111 bits (122), Expect = 3e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | ||| || || || |||||||| ||||| Sbjct 512 ACCACCTCGGAGACGGAGGACTAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGC 571 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| || || ||||| || || |||||||| | || |||||||| || Sbjct 572 AAGAGTTCGGCCGTCTTCGAGTTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCCGGGGG 631 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAG 283035 |||||| ||||||||||| ||||| || || || | || |||| Sbjct 632 AATACCTTCCTTGTCTTGAATCTTGGCCTTCACATTCTCAATAG 675 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 || ||||| || ||||| || ||||||||||| ||||| ||||| || || || || Sbjct 1 CGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCT 60 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGA 283058 ||||||||||||||||| || || ||| | || ||||| || || | || ||||| | | Sbjct 61 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATAGTATCGGACGACTCAACTTCCAAA 120 Query 283059 GTGATCGTCTTACCCGT 283075 ||||| ||||| || || Sbjct 121 GTGATGGTCTTTCCTGT 137 >seq13337 Length=2187 Score = 149 bits (164), Expect = 1e-30 Identities = 163/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 282863 AAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTT 282922 ||| | || ||||||||| || || || |||| || | ||| ||| || |||||||| Sbjct 1729 AAATCATGCACCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTT 1788 Query 282923 GTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 |||||| | |||| || |||||||| || ||||| || ||||| || || | |||||| | Sbjct 1789 GTAGTCGGACAAG-GTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCT 1847 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 | ||| || ||||| ||||||||||| || || ||||| ||| ||||||| ||||| Sbjct 1848 GATCAGGGGGGATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCAC 1907 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | ||| ||||| || ||||||||||| || || Sbjct 1908 TGGATTCAACTTCAAGGGTGATCGTCTTGCCTGT 1941 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || ||||| || | ||| || |||||||||||||| || || Sbjct 2035 CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCC 2094 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || ||||| || ||||||||||| ||||| ||||| || || Sbjct 2095 AGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGG 2154 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACG 283025 || || ||||||||||||||||| || || ||| Sbjct 2155 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 2187 >seq5108 Length=3302 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 282941 GCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTC 283000 |||||| || || ||||| ||||||||||| | |||||||||||| ||| || ||||| Sbjct 1 GCCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCCGGCGGGATGCCCTC 60 Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTG 283037 ||| ||||||||||| || || ||| | || || ||| Sbjct 61 CTTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTG 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046408757845906