Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13339 122 6e-23 seq13337 113 3e-20 seq5107 109 4e-19 seq13340 105 5e-18 seq13338 102 6e-17 >seq13339 Length=377 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | |||| | ||||| ||||| || ||| |||||||||||||| Sbjct 20 TTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTA 79 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || ||| |||| ||||| ||||| |||||||| |||||||| ||||| || Sbjct 80 GTCCGCAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTC 139 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || |||||| ||| | | | |||||||||| ||| Sbjct 140 TGGGGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGA 199 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 || || |||| || ||||| || || || Sbjct 200 CTCGACTTCCAAGGTGATCGTTTTGCCGGT 229 >seq13337 Length=2187 Score = 113 bits (124), Expect = 3e-20 Identities = 112/143 (78%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | | ||||||||||| ||| |||||||||||||||||| Sbjct 2028 TTGCATTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTA 2087 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||||| ||||| || | || || || ||||| ||||||||||| |||||||| ||| Sbjct 2088 ATCGGCCAGAGTT--CGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGA 2145 Query 44222 TCTGAAGGCACACCTTCCTTTTC 44244 || | ||| | |||||||| || Sbjct 2146 TCCGGAGGGATTCCTTCCTTGTC 2168 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| || ||| ||||| ||||||||||| |||| | || | || | || || Sbjct 1757 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAAGGT-ACGGCCATCTTC 1815 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| || || | ||| |||||||| | || | ||||||||| || Sbjct 1816 GAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGGATACCTTCCTTGTCTTG 1875 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || ||| |||| | ||| | |||||||| |||||| || || | || ||||||| Sbjct 1876 AATTTTC-GCTTTGACGTTATCGATGGTGTCACTGGATTCAACTTCAAGGGTGATCGTCT 1934 Query 44307 TTCCCGTGAGG 44317 | || |||||| Sbjct 1935 TGCCTGTGAGG 1945 >seq5107 Length=2524 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | |||| | ||||| ||||| || ||| |||||||||||||| Sbjct 2174 TTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTA 2233 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || || || |||| ||||| ||||| |||||||| |||||||| ||||| || Sbjct 2234 GTCCGCAAGAGTGCAACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTC 2293 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || |||||| ||| | | | |||||||| | ||| Sbjct 2294 TGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGA 2353 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 || || |||| | ||||| || || || Sbjct 2354 CTCGACTTCCAAGATGATCGTTTTGCCAGT 2383 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 ||||| ||| |||| | |||| ||||| || ||| || || |||||||| ||| Sbjct 1597 ATTCCTCCTTGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCG 1656 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 || || || |||| ||||| || || ||||||||||| ||||| || ||||||| Sbjct 1657 GCAAGGGTACGGCCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTG 1716 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| |||| | || | || ||||| | ||||| Sbjct 1717 GGGATGCCTTCCTTGTCTTGGATCTT-GGCTTTGACATTATCAATCGTGTCCGACGATTC 1775 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 ||| |||| || |||||||| || |||||| Sbjct 1776 CACTTCCAGAGTGATCGTCTTACCGGTGAGG 1806 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||| || | | |||| || || ||| |||||| ||||||||||| || Sbjct 1304 CATTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTC 1363 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| ||| |||| || || || || ||||||||||| | ||| || || |||| Sbjct 1364 GGCGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGG 1423 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| || ||||| ||| | | | || || |||| || || Sbjct 1424 AGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTC 1483 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || |||| || || |||||||| |||||| Sbjct 1484 AACTTCCAAAGTGATGGTCTTTCCTGTGAGG 1514 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/186 (71%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 44134 GTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTG 44193 |||||| || |||||| || ||||||||||| || || || |||| || || || Sbjct 1909 GTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCAAGTTG 1968 Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| ||||||||||| | |||||| ||||| | || | || ||||| || ||||| Sbjct 1969 CTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTT 2028 Query 44254 CTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 ||| || ||| | ||||| |||| ||| || || || | || || |||||||| Sbjct 2029 GGCCTTGACATTGT--CGATGGTATCGGAGGACTCGACTTCAAGGGTGATGGTCTTTCCT 2086 Query 44312 GTGAGG 44317 || ||| Sbjct 2087 GTAAGG 2092 >seq13340 Length=1591 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 ||||| || || | ||| |||||| ||||||||||| ||||| | ||| |||| Sbjct 238 AACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCT 297 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| || ||||||||||| ||||| ||||| | || | ||||||||| || Sbjct 298 TCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCT 357 Query 44246 GTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | | ||| | |||||||||| || || ||||| | || || || Sbjct 358 TGGATCTT-TGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGT 416 Query 44305 CTTTCCCGTGAG 44316 ||| || || || Sbjct 417 CTTGCCGGTAAG 428 >seq13338 Length=675 Score = 102 bits (112), Expect = 6e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| |||| | |||| ||||| || ||| || || |||||||| Sbjct 220 TTGCATTCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTA 279 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || || |||| |||| || || ||||||||||| | ||| || ||||| Sbjct 280 GTCGGCAAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATC 339 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGG 44282 || || | |||||||| || ||||| |||| | ||| | || ||||| | | Sbjct 340 TGGGGGGATTCCTTCCTTATCTTGGATCTT-AGCTTTGACGTTATCAATCGTGTCCGACG 398 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 ||||||| |||| || |||||||| || |||||| Sbjct 399 ATTCCACTTCCAGAGTGATCGTCTTACCGGTGAGG 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359882299270263