Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008935.1_202017-03-01] 24,639 sequences; 68,656,445 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq13337 143 6e-29 seq5107 140 8e-28 seq13339 136 1e-26 seq13338 131 4e-25 seq2185 86.0 2e-11 >seq13337 Length=2187 Score = 143 bits (158), Expect = 6e-29 Identities = 147/188 (78%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 |||||||| || ||||||||||| || || ||| | ||||||||||| ||||||||| Sbjct 1944 CTCACAGGCAAGACGATCACCCTTGAAGTTGAATCCAGTGACACCATCGATAACGTCAAA 1885 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || ||||| ||||| ||||| ||||| || || |||||||| || || |||||||| Sbjct 1884 GCGAAAATTCAAGACAAGGAAGGTATCCCCCCTGATCAGCAACGTCTCATTTTCGCCGGC 1825 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACT 178120 || || ||||||||||| | || |||| |||| || ||| |||| || ||||| || || Sbjct 1824 AAGCAACTCGAAGATGGCCGTAC-CTTGTCCGACTACAACATCCAGAAGGAATCCACCCT 1766 Query 178121 GCATCTTG 178128 || |||| Sbjct 1765 CCA-CTTG 1759 Score = 114 bits (126), Expect = 3e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||||||||||||||| || || || | ||||| |||||||| Sbjct 2177 AAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGAAAG 2118 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || ||||||||||| | ||||| |||||||| ||| ||||||| || || || || || Sbjct 2117 CAACTCGAAGATGGTCGAACTCTGGCCGATTACAACATCCAAAAGGAGTCCACTCTTCAC 2058 Query 178125 CTTGTT 178130 || ||| Sbjct 2057 CTGGTT 2052 >seq5107 Length=2524 Score = 140 bits (154), Expect = 8e-28 Identities = 148/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || |||||||||| | | || || || ||| |||||||| || |||||||| Sbjct 2383 ACTGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCAAGGCG 2324 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||| ||||| ||||| || || || ||||||||||| | || || |||||||| Sbjct 2323 AAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 2264 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || || || | |||||||| || || ||| |||||||||| ||||| || ||| Sbjct 2263 CAACTGGAGGACGGTTGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAACCCTTCAT 2204 Query 178125 CTTGTTTTGAGACTC 178139 || ||| | ||||| Sbjct 2203 CTGGTTCTCCGACTC 2189 Score = 118 bits (130), Expect = 3e-21 Identities = 143/191 (75%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || ||||| || |||||||||||||| || ||| ||||| ||||| |||||||| Sbjct 929 CTTACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACTATCGATAACGTCAAG 870 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 || || || ||||| || || ||||| || || |||||||| || || |||||||| Sbjct 869 GCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACGTCTCATTTTCGCCGGC 810 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACT 178120 || || ||||||||||| | || |||| ||||||| || |||| | ||||||| || Sbjct 809 AAGCAACTCGAAGATGGTCGTAC-CTTGTCCGATTACAATATCCAGGAGAAATCAACCCT 751 Query 178121 GCATCTTGTTT 178131 || |||| || Sbjct 750 TCA-CTTGGTT 741 Score = 118 bits (130), Expect = 3e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||||||||| || ||||| | || || || || || || || || |||||||| Sbjct 1513 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 1454 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || ||||| || || || ||||| ||||| ||||| || ||||| |||||| Sbjct 1453 GCTAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAACAACGTCTCATCTTTGCCGGA 1394 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| || ||||| || | || || ||||| || ||| |||| || || || ||||| Sbjct 1393 AAACAACTTGAAGACGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACACTC 1334 Query 178122 CAT 178124 ||| Sbjct 1333 CAT 1331 Score = 114 bits (126), Expect = 3e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| ||||| | ||||| ||| || ||||| || || |||||||| Sbjct 1223 ACTGGCAAAACCATCACTTTGGAGGTCGAATCATCGGACACTATTGACAACGTCAAGGCC 1164 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||||||||| ||||| || || || || ||||| || ||||| Sbjct 1163 AAGATCCAAGACAAGGAAGGAATCCCACCGGATCAACAGCGTCTAATCTTTGCTGGAAAG 1104 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || ||||| | ||| | ||| |||| ||| | ||||| || || || || ||| Sbjct 1103 CAACTTGAGGATGGTCGAACTTTGGCCAATTACAACATTCAAAAGGAGTCCACCCTTCAT 1044 Query 178125 CTTGTT 178130 | ||| Sbjct 1043 TTGGTT 1038 >seq13339 Length=377 Score = 136 bits (150), Expect = 1e-26 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || |||||||||||| | || || || ||| |||||||| || |||||||| Sbjct 229 ACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAGGCG 170 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||| ||||| ||||| || ||||||||||| | || || |||||||| Sbjct 169 AAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGAAAG 110 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || || || || | || ||||| || || ||| |||||||||| || || || ||| Sbjct 109 CAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTTCAT 50 Query 178125 CTTGTTTTGAGACTC 178139 || ||| | ||||| Sbjct 49 CTGGTTCTCCGACTC 35 >seq13338 Length=675 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || |||||||| || || |||||| || ||||| || || ||||||||| Sbjct 432 CTCACCGGTAAGACGATCACTCTGGAAGTGGAATCGTCGGACACGATTGATAACGTCAAA 373 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || || || ||||||||||| || || || ||||| || ||||| ||||| Sbjct 372 GCTAAGATCCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTCTAATCTTTGCCGGT 313 Query 178062 AAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTG 178121 ||||| | ||||| || | || |||||||| || ||| | || ||||| || || || Sbjct 312 AAACAATTGGAAGACGGTCGTACCCTTGCCGACTACAACATTCAGAAAGAGTCTACCCTT 253 Query 178122 CATCTTGTTTTGAGACT 178138 ||| | ||| | |||| Sbjct 252 CATTTGGTTCTCCGACT 236 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||||||||| || ||||| | || || || || || || || || |||||||| Sbjct 140 CTCACAGGAAAGACCATCACTTTGGAAGTTGAGTCGTCCGATACTATTGACAACGTCAAG 81 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGA 178061 ||||| || ||||| ||||||||||||||||| || || || | ||||| |||||| Sbjct 80 GCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGATCAACAGCGTTTAATCTTTGCCGGA 21 Query 178062 AAACAGCTCGAAGATGG 178078 || || ||||||||||| Sbjct 20 AAGCAACTCGAAGATGG 4 >seq2185 Length=9687 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 ||||| || || || |||||||||||||| ||| | | ||||| ||||| || ||||| Sbjct 535 CTCACCGGTAAGACCATCACCCTCGAGGTCGAATCCGCCGACACGATCGACAATGTCAAG 594 Query 178002 CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 ||||||||| || || ||||| ||||| || ||||| || ||| Sbjct 595 ACAAAGATTCAAGAGAAGGAAGGCATCCCCCCAGACCAACAGCGA 639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203351197482966