Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4123 98.7 9e-16 seq10790 89.7 4e-13 seq10792 82.4 7e-11 >seq4123 Length=2531 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| |||||||||||||||||| || ||| || |||||| Sbjct 1040 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCCTCA 1099 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || |||||||| |||| |||||||| ||||| || || || || ||||| ||| Sbjct 1100 AGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTTGG 1159 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||||||| || | |||||||| | || | ||||| Sbjct 1160 ATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGAT-TCGACCTCCAAAGTGATGGTTTT 1218 Query 118709 GCCGGT 118714 ||| || Sbjct 1219 GCCAGT 1224 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| ||| ||||| || || |||||||| ||| | ||||| || || Sbjct 1327 ACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCTTCA 1386 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || |||||||| || |||||||||| || || || ||||| ||||||||||||||| Sbjct 1387 AGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAGGAATGCCCTCCTTGTCT 1443 Score = 86.0 bits (94), Expect = 5e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||| |||||||| || | |||||| ||||| || || ||||| Sbjct 2212 GTTGACTCTTTTTGGATGTTGTAGTCCGCAAGAGTGCGACCGTCCTCCAGTTGCTTTCCG 2271 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| ||||| || || || || || ||||||||| ||| || || Sbjct 2272 GCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTG 2331 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | || | |||||| | | |||||| || | | | | |||||||||||||| Sbjct 2332 ACGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATCGTTTTGCCGGTCA 2386 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || ||||| | |||||||| || |||||||||||||| | || || ||||| Sbjct 1905 ACTAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTTCGGCCGTCCTCA 1964 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || || |||| |||||||| ||||| || || ||||||||||| ||| Sbjct 1965 AGTTGCTTGCCGGCAAAGATAAGACGCTGTTGATCCGGGGGAATGCCCTCCTTATCTTGG 2024 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | | |||||| |||| ||| | || || Sbjct 2025 ATCTTGGCCTTGACATTGTCGATGGTATCGGAGGACTCGACTTCGAGGGTGATGGTCTTT 2084 Query 118710 CCGGTCAG 118717 || || || Sbjct 2085 CCTGTAAG 2092 >seq10790 Length=2194 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| ||||| |||||||||||| || ||| || ||| ||| Sbjct 2056 ACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGGCCAGAGTTCGACCATCTTCG 2115 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || ||||| || |||| | |||||| ||||| ||||| || || ||||||||| Sbjct 2116 AGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAGGGATTCCTTCCTTGTCT 2172 >seq10792 Length=373 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||||||||| |||||||| || | ||||| ||||| || || ||||| Sbjct 53 GTCGACTCTTTTTGGATGTTGTAGTCCGCAAGGGTGCGACCGTCCTCCAGTTGCTTTCCG 112 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || | || | ||| ||||| || || || || || ||||||||| || || || Sbjct 113 GCAAAAATCAAACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 172 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | || | |||||| | | |||||| || | ||| | |||||||||||||| Sbjct 173 ACGTTGTCAATGGTGTCGGAGGACTCGACTTCCAAGGTGATCGTTTTGCCGGTCA 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433723289714536