Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq10793 86.0 7e-12 seq4123 84.2 3e-11 >seq10793 Length=1593 Score = 86.0 bits (94), Expect = 7e-12 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| ||||| | |||||| ||| |||||| || || ||||| || |||| || || | Sbjct 234 ACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCC 293 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||||||||| || || | |||||| || || | || | | ||||| Sbjct 294 GTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTT 353 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| ||| |||| ||| | | | |||||| || || || || | |||| Sbjct 354 GTCTTGGATCTTTGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGA 412 Query 43147 TGGTTTTGCCCGTTAG 43162 |||| ||||| || || Sbjct 413 TGGTCTTGCCGGTAAG 428 >seq4123 Length=2531 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| |||||||||||| |||||||| |||| ||| || | || || Sbjct 1040 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCCTCA 1099 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| ||||| || || || ||||| || || | || | | ||||| || | Sbjct 1100 AGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTTGG 1159 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || |||| ||| | | | ||||| ||||| || || | ||||||||||| Sbjct 1160 ATCTTGGCCTTGA-CGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATGGTTTT 1218 Query 43154 GCCCGTTA 43161 ||| |||| Sbjct 1219 GCCAGTTA 1226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571672801488240