Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10791 104 2e-17 seq4123 95.1 9e-15 >seq10791 Length=597 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| || |||| || |||| ||||| || || ||||| ||||||||||||||||| Sbjct 191 TCCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGC 250 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || |||||||||||||| || ||| |||| || | ||||||||| ||| Sbjct 251 AAGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGG 310 Query 18218 CACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 311 GATTCCTTCCTTATC 325 >seq4123 Length=2531 Score = 95.1 bits (104), Expect = 9e-15 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 18091 TTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGT 18150 ||||| |||||| || |||| || |||| ||||| || || ||||| |||||||||| Sbjct 1593 TTTGTATTCCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGT 1652 Query 18151 AGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGAT 18210 ||||||| | || || || |||| |||||| || ||| |||| | | |||||||| Sbjct 1653 AGTCGGCAAGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGAT 1712 Query 18211 CCACGGGCACGCCTTCCTTATC 18232 | ||| | ||||||||| || Sbjct 1713 CTGTGGGGATGCCTTCCTTGTC 1734 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| || || |||| || |||| ||||| ||||| |||||||| ||||||||||| || Sbjct 2181 TCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCGC 2240 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || || || |||| ||| || || ||| | || | | ||| || || ||| Sbjct 2241 AAGAGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGGG 2300 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | |||||| | ||| |||||| || |||| Sbjct 2301 AATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGAC 2360 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAAT 18305 ||| | | |||| |||||||||||||| Sbjct 2361 TTCCAAGATGATCGTTTTGCCGGTCAAT 2388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379250342100210