Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10793 82.4 8e-11 seq10791 82.4 8e-11 seq4123 82.4 8e-11 >seq10793 Length=1593 Score = 82.4 bits (90), Expect = 8e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| |||||| | ||| |||||| Sbjct 253 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCCAACTGCTTACCA 312 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| || || ||||| || || || ||||| ||||| ||| ||| || Sbjct 313 GCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGGATCTTTGCCTTG 372 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | | || | ||||||| | ||| ||||||| || | ||||||||||| Sbjct 373 ACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGT 425 >seq10791 Length=597 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | ||| || |||| ||||||||||| |||||||| || ||| Sbjct 192 CCTCCTCGAAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 251 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | |||||||| ||| |||| |||||||| ||||| || || Sbjct 252 AGGGTACGACCGTCTTCCAATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGG 311 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || ||| | | || | ||||| | | ||||| Sbjct 312 ATTCCTTCCTTATCTTGGATCTTAGCTTTGACGTTATCAATCGTGTCCGACGATTCCACT 371 Query 139718 TCAACGGTCACCGTCTTGCCGGT 139740 || | || | |||||| ||||| Sbjct 372 TCCAGAGTGATCGTCTTACCGGT 394 >seq4123 Length=2531 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | ||| || |||| ||||||||||| |||||||| || ||| Sbjct 1601 CCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCA 1660 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || || |||||||| ||| |||| | |||||| ||||| | || Sbjct 1661 AGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGG 1720 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||| | | || | ||||| | | ||||| Sbjct 1721 ATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCACT 1780 Query 139718 TCAACGGTCACCGTCTTGCCGGT 139740 || | || | |||||| ||||| Sbjct 1781 TCCAGAGTGATCGTCTTACCGGT 1803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495938384193600