Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10793 104 2e-17 seq4123 98.7 9e-16 >seq10793 Length=1593 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || ||||| | |||||||| || ||||| || | ||| || ||| || ||| | Sbjct 235 CGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCG 294 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||| || || ||||||| |||| || ||||| || ||||||||||| ||| Sbjct 295 TCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGAATACCTTCCTTG 354 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||||||||||| | | | ||||| | ||||| |||| |||||| Sbjct 355 TCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGAGTGATG 414 Query 94973 GTTTTTCCAGTAAGA 94987 || || || |||||| Sbjct 415 GTCTTGCCGGTAAGA 429 >seq4123 Length=2531 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 94754 GCTAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTA 94813 ||| ||| |||| ||| ||| || ||| || | | ||| | |||| || | || Sbjct 2155 GCTTACGTTTTTACAAAGATTTGCATTCCACCACGGAGTCGGAGAACCAGATGAAGGGTT 2214 Query 94814 GATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGC 94871 || || ||||| | ||| || || | || || || || |||||||| || |||||| Sbjct 2215 GACTCTTTTTGGATGTTGTAGTC-CGCA-AGAGTGCGACCGTCCTCCAGTTGCTTTCCGG 2272 Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || || | |||||| ||||| ||||||||||| ||||| | ||| || ||||||| Sbjct 2273 CAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTCGCCTTGA 2332 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 || | | | ||||||| | ||||| || | |||| ||||| || || Sbjct 2333 CGTTGTCAATGGTGTCAGAGGACTCGACTTCCAAGATGATCGTTTTGCCGGT 2384 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | || || |||||||| | ||| |||||| || ||| | || ||||| Sbjct 1040 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGT--TCGACCATCCT 1097 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || ||||| ||||||||| | || ||||| || || || ||||| || || | Sbjct 1098 CAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTT 1157 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||||||| | | | |||||| | ||||| || | |||||||||| Sbjct 1158 GGATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATGGTTT 1217 Query 94977 TTCCAGT 94983 | ||||| Sbjct 1218 TGCCAGT 1224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448177681460880