Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8554 120 5e-23 seq9195 118 2e-22 seq1302 91.5 2e-14 seq17591 87.8 3e-13 seq8557 84.2 3e-12 seq18596 80.6 4e-11 >seq8554 Length=8550 Score = 120 bits (132), Expect = 5e-23 Identities = 105/128 (82%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||||| | || |||||||||||||| |||||||||||||| ||||| | Sbjct 2275 GTCATCGTAAGATCT-TGCGTGATAACATCCAAGGTATCACCAAGCCAGCCATCCGAAGA 2217 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || |||||||| || |||||||| ||| ||||||| || |||||||||||| ||| | | Sbjct 2216 CTTGCTCGTCGAGGAGGAGTCAAACGTATCTCTGGCCTGATCTATGAAGAGACTCGAGGT 2157 Query 16559 GTTTTGAA 16566 || |||| Sbjct 2156 GTACTGAA 2149 >seq9195 Length=22460 Score = 118 bits (130), Expect = 2e-22 Identities = 105/129 (81%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||||| | ||||| ||||||||||| |||||||| || |||||||||||| Sbjct 14334 GTCATCGTAAGATCT-TGCGAGACAACATCCAAGGTATCACCAAACCGGCTATCCGTCGT 14276 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || |||||||| || |||||||| ||| ||||||| ||| | || ||||| | |||| Sbjct 14275 CTTGCTCGTCGAGGAGGAGTCAAACGTATCTCTGGTTTGATTTACGAAGAAACCCGTGGA 14216 Query 16559 GTTTTGAAG 16567 ||| | ||| Sbjct 14215 GTTCTCAAG 14207 Score = 96.9 bits (106), Expect = 5e-16 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 16563 TGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAAC 16622 || ||||||||||| ||| ||| |||| || | || || ||||||||||| || | Sbjct 14105 TGTAGATCTTCCTCGAGAACGTCATCCGAGACTCGGTCACTTACACCGAGCACGCCAAGC 14046 Query 16623 GTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTT 16682 | ||||| ||||||||| |||| ||||||| || | |||||||||||||||| | | Sbjct 14045 GCAAGACGGTCACCTCCTTGGACGTCGTCTACGCCCTCAAACGTCAAGGCCGTACCCTCT 13986 Query 16683 ATGGTTTTGGA 16693 | ||||| ||| Sbjct 13985 ACGGTTTCGGA 13975 >seq1302 Length=14364 Score = 91.5 bits (100), Expect = 2e-14 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||| ||||||||| ||||||||||| ||||||||||| || || || | Sbjct 10848 GTCATCGTAAGAT-TCTTCGAGACAACATCCAAGGTATCACCAAGCCTGCCATTCGAAGA 10790 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 ||||||| || || || ||||||||| |||| || | |||| || |||| ||| | | Sbjct 10789 TTGGCTCGACGAGGAGGTGTCAAGCGTATCTCCGGCCTTATCTACGAGGAGACTCGAGGT 10730 Query 16559 GT 16560 || Sbjct 10729 GT 10728 >seq17591 Length=3600 Score = 87.8 bits (96), Expect = 3e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||| |||||| |||||||||||||| || | | || |||||||| || |||||| Sbjct 2058 GATAACACCCAAGGCATCACCAAGCCAGCCATTTGAAGACTTGCTCGTCGAGGAGGAGTC 1999 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || ||| | ||||| || |||||||||||| Sbjct 1998 AAACGTATTTCTGGTCTGATCTATGAAGAGA 1968 >seq8557 Length=11256 Score = 84.2 bits (92), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | || |||||||||||||| |||||||||||||| || | | || |||| | Sbjct 1063 AGATCT-TGCGTGATAACATCCAAGGCATCACCAAGCCAGCCATTCAAAGACTTGCTCAT 1121 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || |||||||| | | | ||||| || |||||||||||| Sbjct 1122 TGAGGAGGAGTCAAACATATTTCTGGTCTGATCTATGAAGAGA 1164 >seq18596 Length=1124 Score = 80.6 bits (88), Expect = 4e-11 Identities = 74/94 (79%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||| |||||||| || |||||||||||||| ||||| || || || || || || ||| Sbjct 190 CGAGACAACATCCAGGGTATCACCAAGCCAGCCATCCGCCGACTCGCCCGACGAGGAGGA 249 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || || || |||| |||||| | || || |||| Sbjct 250 GTTAAACGAATCTCAGGATTGATTTACGAGGAGA 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056677968794