Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq5367 87.8 3e-12 >seq5367 Length=14932 Score = 87.8 bits (96), Expect = 3e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 193674 CATGTTAAAGTTTCCTTTGAGATGCCAGAGTATACTTCTAATGTTGATGCTTTAGGAACT 193733 ||||| ||||| || ||||| ||| | || ||||| |||| || | |||||||| Sbjct 2739 CATGTGAAAGTCTCGTTTGATATGGCCGAATATACAGGGGATGTAGACGGATTAGGAACC 2798 Query 193734 CTTAGAATACTTGAAGCAGTTCGTATGTTGGGAATGGAGAAAGATGTTCGCATCTATCAG 193793 | ||| || | || || |||| | || || | ||| ||||||| ||||||| Sbjct 2799 TTAAGATTATTAGACGCCATTCGAACGTGTGGTCTTACTAAACATGTTCGATTCTATCAA 2858 Query 193794 GCATCTACCAGCGAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCA 193853 || ||||| ||||| |||||| ||| | | ||||| | | | |||| || || Sbjct 2859 GCTTCTACTTCGGAACTTTATGGTAAAGTTATCGAAACTCCTCAAACTGAAAATACTCCT 2918 Query 193854 TTTCATCCACGCTCTCCTTATGGTGTAGCAAAGTTGTA 193891 || |||| | |||||||||||||| || ||||| || Sbjct 2919 TTCTATCCTAGATCTCCTTATGGTGTTGCTAAGTTATA 2956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807350706834480