Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8938 86.0 8e-12 >seq8938 Length=53458 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/172 (73%), Gaps = 6/172 (3%) Strand=Plus/Minus Query 63928 CATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGAT 63987 |||| || | | ||| || || || | ||| || || || || || || ||||| |||| Sbjct 23015 CATAAGTGTAAAGATCTTCGATAACCTGACTGAAGAGCTTCTTAGTCTCTTTGTGAAGAT 22956 Query 63988 T--TGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT 64045 | |||| || || ||||| ||||| | ||||||||||||||| | || || || || Sbjct 22955 TGCTGATT--GCGATCCTGGCAGCTAGGACGGCATAATCCGGATGGCGAGTGGT-CATGT 22899 Query 64046 -GGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64096 || || |||| ||||||| |||||||||| ||||| || || ||||| Sbjct 22898 AAGCAGCGGTTTCAGCTGCCAAGTTGTCCAATTCGACCGTGGTGACACCATT 22847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622789454195280