Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq16575 140 2e-28 seq18430 98.7 7e-16 seq8786 98.7 7e-16 seq4123 89.7 3e-13 seq10790 86.0 4e-12 seq10791 84.2 1e-11 >seq16575 Length=582 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 110 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 51 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 50 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 16 >seq18430 Length=242 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 190 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 131 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 130 ACCTATATTTAGCCTTA 114 >seq8786 Length=14415 Score = 98.7 bits (108), Expect = 7e-16 Identities = 83/101 (82%), Gaps = 11/101 (11%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCG------CTAGATAGTAGATAGGGG--GT---AA 25950 ||||| ||| |||||||||| ||||| ||||||||||||||||| || || Sbjct 4655 AAGCCTGTTGTCTTGGCTGTGATTTCGGTTTTGCTAGATAGTAGATAGGGACAGTGAGAA 4714 Query 25951 TCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||||| |||||||||||||||||||||||||||| Sbjct 4715 TCTTGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 4755 >seq4123 Length=2531 Score = 89.7 bits (98), Expect = 3e-13 Identities = 104/139 (75%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| | | | | ||||||||||| ||| |||||||||||| ||||||| Sbjct 1018 CATT-CCACCTCGGAGATGGAGAACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAAT 1076 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | |||| || | || || | ||| ||||| ||||| ||||| || |||||||| | Sbjct 1077 CGGCCAAAGTTCGACCATCCTCAAGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCG 1136 Query 38206 AGGGGACGCCTTCTTTGTC 38224 |||| ||||| || || Sbjct 1137 GTGGGATTCCTTCCTTATC 1155 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||| || ||||| ||||| || | | ||| |||| || Sbjct 1619 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGACCGTCCTCC 1678 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 | |||||| |||||||| |||| ||||||||||| | ||||| |||||| ||||| Sbjct 1679 AGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGGGGATGCCTTCCTTGTC 1734 >seq10790 Length=2194 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||||| | ||| | |||| ||||||||| ||||||||| || ||||||| Sbjct 2034 CATT-CCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAAT 2092 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | || | || | || || | ||| ||||||||||| |||| || |||||||| | Sbjct 2093 CGGCCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCG 2152 Query 38206 AGGGGACGCCTTCTTTGTC 38224 |||| ||||| ||||| Sbjct 2153 GAGGGATTCCTTCCTTGTC 2171 >seq10791 Length=597 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||| || ||| || ||||| ||||| || | | ||| |||| || Sbjct 210 ACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGGCAAGGGTACGACCGTCTTCC 269 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||||||| |||||||| ||||| ||||||||||| | ||||| ||||| || || Sbjct 270 AATTGTTTACCGGCAAAGATTAGACGTTGTTGATCTGGGGGGATTCCTTCCTTATC 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334864503420398