Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4123 102 7e-17 seq10792 93.3 4e-14 >seq4123 Length=2531 Score = 102 bits (112), Expect = 7e-17 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 25020 TTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACT 25075 |||||||| ||| | |||| | ||||| ||||| |||||||| || || |||| Sbjct 2387 TTGACCGGCAAAACGATCATCTTGGAAGTCGAGTCCTCTGACACCATTGACAACGTCA-- 2330 Query 25076 GAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGC 25135 | || || | ||| ||||| ||||| ||||| || ||||| || || | |||||||| Sbjct 2329 -AGGCGAAGATTCAA-GACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGATTTTTGC 2272 Query 25136 CGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCAC 25195 ||| || ||| | || || | ||||||| | | || ||||| || |||||||| || || Sbjct 2271 CGGAAAGCAACTGGAGGACGGTCGCACTCTTGCGGACTACAACATCCAAAAAGAGTCAAC 2212 Query 25196 GCTACATTTAGTGCT 25210 || ||| | || || Sbjct 2211 CCTTCATCTGGTTCT 2197 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 |||| | || |||||| || || || | ||||| ||||||| || || ||||||| Sbjct 943 ATATCTTTACAGACTT--ACAGGCAAGACGATCACCCTCGAAGTTGAATCTAGTGACACT 886 Query 25065 ATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 || || | || | ||| |||||| ||||| || || || |||||||| || || || Sbjct 885 ATTGA-TAACGTCAAGGCGAAAATCCAAGACAAGGAGGGTATCCCACCTGATCAGCAACG 827 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | ||||| |||||||| ||| | ||||||| ||| || || |||||||||||| || Sbjct 826 TCTCATTTTCGCCGGCAAGCAACTCGAAGATGGTCGTACCTTGTCCGATTACAATATCCA 767 Query 25184 AAAAGAATCCACGCTACATTTAGTGCT 25210 | |||| || || || || || || Sbjct 766 GGAGAAATCAACCCTTCACTTGGTTCT 740 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCAC 25090 ||||||| ||||||| ||||| || || || ||||| || || ||| || ||| Sbjct 2079 CCATCACCCTCGAAGTCGAGTCCTCCGATACCATCGA--CAATGTCAAGGCCAAGATCCA 2022 Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150 || || || || ||||| || || |||||||| |||| ||||||||||| ||| | || Sbjct 2021 AGATAAGGAGGGCATTCCCCCGGATCAACAGCGTCTTATCTTTGCCGGCAAGCAACTTGA 1962 Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || | || || | | |||||||| ||||| || || || || || || ||||| || Sbjct 1961 GGACGGCCGAACCCTTGCTGATTACAACATTCAGAAGGAGTCTACCCTTCACTTAGTCCT 1902 >seq10792 Length=373 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 25020 TTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAG 25079 |||||||| ||| | ||||| | ||||| ||||| || ||||| || || | ||| Sbjct 228 TTGACCGGCAAAACGATCACCTTGGAAGTCGAGTCCTCCGACACCATTGACAACGTCAAG 169 Query 25080 CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGC 25139 || ||| ||||| ||||| || || || ||||| || || | ||||||||||| Sbjct 168 GCGAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAGCAACGTTTGATTTTTGCCGGA 109 Query 25140 AAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTA 25199 || ||| | || || | |||||| | | || ||||| || |||||||| || || || Sbjct 108 AAGCAACTGGAGGACGGTCGCACCCTTGCGGACTACAACATCCAAAAAGAGTCGACCCTT 49 Query 25200 CATTTAGTGCT 25210 ||| | || || Sbjct 48 CATCTGGTTCT 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433221013754270