Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20striiformis_20[genbank_20GCA_5F002008965.1_202017-03-01] 20,258 sequences; 69,592,563 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4123 165 2e-35 seq10790 149 1e-30 seq10792 136 7e-27 seq10793 129 1e-24 seq10791 104 4e-17 seq1821 98.7 2e-15 >seq4123 Length=2531 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | ||||| || || |||||||| || |||||||| || |||| Sbjct 1307 TTCCTCCTCGGAGACGGAGGACCAAATGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGG 1366 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||| || | || ||||| | || || ||||| || ||||| | ||||||||| || | Sbjct 1367 CGAGGGTGCGACCGTCTTCAAGTTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCTGGAG 1426 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||| ||||||||||| ||||| ||||||||| || || || || | || || | Sbjct 1427 GAATGCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCAATAGTATCGGACGACTCAA 1486 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||||| |||||||| ||||| |||||| Sbjct 1487 CTTCCAAAGTGATGGTCTTTCCTGTGAGG 1515 Score = 140 bits (154), Expect = 6e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| || || || ||||||||||||||||| || || | Sbjct 2180 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTTGACTCTTTTTGGATGTTGTAGTCCG 2239 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | ||||| ||||| || || | | ||| ||||| || | Sbjct 2240 CAAGAGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 2299 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||||||||||||||| ||||||||| || |||||||| | || || | Sbjct 2300 GAATACCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCAGAGGACTCGA 2359 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||| |||| ||||| || || Sbjct 2360 CTTCCAAGATGATCGTTTTGCCGGT 2384 Score = 136 bits (150), Expect = 7e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || || |||||||| ||||| ||||| ||||||| | || | ||||| || Sbjct 1040 ACCAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAAAGTTCGACCATCCTCA 1099 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||||| || || || || || | ||||| || ||||| || |||||||| ||||| Sbjct 1100 AGTTGCTTTCCAGCAAAGATTAGACGCTGTTGATCCGGTGGGATTCCTTCCTTATCTTGG 1159 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| || || ||||| | |||||| || ||||| ||||||||||| Sbjct 1160 ATCTTGGCCTTGACGTTGTCAATAGTGTCCGATGATTCGACCTCCAAAGTGATGGTTTTG 1219 Query 68433 CCCGT 68437 || || Sbjct 1220 CCAGT 1224 Score = 120 bits (132), Expect = 6e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || | | ||||| || |||||||| Sbjct 725 CCACCACGGAGACGGAGAACCAAGTGAAGGGTTGATTTCTCCTGGATATTGTAATCGGAC 784 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| ||||| | ||| || || ||||| Sbjct 785 AAGGTACGACCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGTGGG 844 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| || || ||||||||| || || ||||| ||||| ||| Sbjct 845 ATACCCTCCTTGTCTTGGATTTTCGCCTTGACGTTATCAATAGTGTCACTAGATTCAACT 904 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | |||||| || || || || || Sbjct 905 TCGAGGGTGATCGTCTTGCCTGTAAG 930 Score = 120 bits (132), Expect = 6e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | ||||| || || || |||||||| || ||||| || |||| Sbjct 1599 TTCCTCCTCGGAGTCGGAGAACCAAATGAAGGGTAGACTCTTTCTGAATGTTGTAGTCGG 1658 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | || || ||||| || || | | |||||| || | | Sbjct 1659 CAAGGGTACGACCGTCCTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGTGG 1718 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||||||||||||||| ||||| || ||||| || || ||||| | ||||| | Sbjct 1719 GGATGCCTTCCTTGTCTTGGATCTTGGCTTTGACATTATCAATCGTGTCCGACGATTCCA 1778 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 |||||| ||||| || || || |||||| Sbjct 1779 CTTCCAGAGTGATCGTCTTACCGGTGAGG 1807 >seq10790 Length=2194 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| || || |||||||| || ||||| Sbjct 1742 CCACCACGGAGACGGAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1801 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | ||||| |||||||| ||||| | ||| || || || || Sbjct 1802 AAGGTACGGCCATCTTCGAGTTGCTTGCCGGCGAAAATGAGACGTTGCTGATCAGGGGGG 1861 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||||||||| || || |||||| ||||||||||| ||||| ||| Sbjct 1862 ATACCTTCCTTGTCTTGAATTTTCGCTTTGACGTTATCGATGGTGTCACTGGATTCAACT 1921 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | |||||| || || || |||||| Sbjct 1922 TCAAGGGTGATCGTCTTGCCTGTGAGG 1948 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| ||| || |||||||| ||||||||||| ||||||| Sbjct 2036 TTCCACCTCGGAGACGGAGAACCAGGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCGG 2095 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | |||||||| | ||||| ||||| || || | | ||||| || || | Sbjct 2096 CCAGAGTTCGACCATCTTCGAGTTGCTTTCCGGCAAAGATTAAACGCTGTTGATCCGGAG 2155 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 | || |||||||||||||| ||||| ||||||||| Sbjct 2156 GGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 2190 >seq10792 Length=373 Score = 136 bits (150), Expect = 7e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||| || || || ||||||||||||||||| || || | Sbjct 21 TTCCACCACGGAGTCGGAGAACCAGATGAAGGGTCGACTCTTTTTGGATGTTGTAGTCCG 80 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || || || | ||||| ||||| || || | | ||| ||||| || | Sbjct 81 CAAGGGTGCGACCGTCCTCCAGTTGCTTTCCGGCAAAAATCAAACGTTGCTGGTCTGGGG 140 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || |||||||||||||| ||||| ||||||||| || |||||||| | || || | Sbjct 141 GGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCAATGGTGTCGGAGGACTCGA 200 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGT 68437 ||||||||||||| ||||| || || Sbjct 201 CTTCCAAGGTGATCGTTTTGCCGGT 225 >seq10793 Length=1593 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || || || | || | |||||||| || |||||||| || |||| Sbjct 223 CCACCACGAAGACGTAACACGAGATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 282 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| |||||||| || || || || | || ||||| || || ||| Sbjct 283 AAGGTGCGGCCGTCTTCCAACTGCTTACCAGCAAAGATCAATCGCTGTTGATCAGGGGGA 342 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||||||||||||| || |||||||| | || || || Sbjct 343 ATACCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCAATGGTGTCGGAAGACTCGACC 402 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | |||||||| || || || || Sbjct 403 TCAAGAGTGATGGTCTTGCCGGTAAG 428 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | ||| || ||||| || || || | ||||||||| || || ||||| ||| Sbjct 5 CCATCTTCCAGCTGTTTACCGGCAAAGATAAGACGTTGTTGGTCTGGCGGGATGCCCTCC 64 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || ||||| ||||| ||||||||| || || ||||| | || || || || | |||| Sbjct 65 TTATCTTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGGACTCAACCTCTAGGGTG 124 Query 68424 ATGGTTTTTCCCGT 68437 |||||||| || || Sbjct 125 ATGGTTTTGCCAGT 138 Score = 89.7 bits (98), Expect = 9e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398 ||||||||| || || || || |||||||||||||| || ||||||||| |||||||| Sbjct 693 TTGTTGGTCTGGAGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACGTTGTCGATGGT 752 Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||| | || || ||||| | ||||||||||| || || || Sbjct 753 GTCGGACGACTCAACTTCGAGAGTGATGGTTTTACCGGTAAG 794 >seq10791 Length=597 Score = 104 bits (114), Expect = 4e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || || |||||||||||||||||||| ||||||||||||||| ||||| || Sbjct 5 TGCTGATCCGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTGTCGATAGTA 64 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | || || |||||||| |||||||| ||||| |||||| Sbjct 65 TCGGACGACTCAACTTCCAAAGTGATGGTCTTTCCTGTGAGG 106 >seq1821 Length=9687 Score = 98.7 bits (108), Expect = 2e-15 Identities = 83/102 (81%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 |||||||| || || ||||||||||| ||||||||||||| |||||| ||||| ||| Sbjct 634 TGTTGGTCTGGGGGGATGCCTTCCTTCTCTTGAATCTTTGTCTTGACATTGTCGATCGTG 575 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||||| || || | ||||||||| || || |||||| Sbjct 574 TCGGCGGATTCGACCTCGAGGGTGATGGTCTTACCGGTGAGG 533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921389022167760